View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_low_64 (Length: 238)
Name: NF1500_low_64
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_64 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 30946426 - 30946203
Alignment:
| Q |
18 |
atgatgccaatattcnnnnnnnggaattccaagtaggggagaaagtcttactctgtaactccaaactaaag-----------aaaattaaattcaagatg |
106 |
Q |
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| T |
30946426 |
atgatgccaatattcaaaaaaaggaattccaagtaggggagaaagtcttactctgtaactccaaactaaagctatttcctagaaaattaaattcaagatg |
30946327 |
T |
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| Q |
107 |
gtttagaccttgtgtgatttcttaagtcttctccaatggaacaattacattgacagaggattatgtatggaaattcaagttgaacgccaaagagtcaagc |
206 |
Q |
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| T |
30946326 |
gtttagacctt--------tcttaagtcttctccaatggaacaattacattgacagaggattatgtatggaaattcaagttgaacgccaaagagtcaagc |
30946235 |
T |
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| Q |
207 |
actacttgattttggataacataactaacaat |
238 |
Q |
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| T |
30946234 |
actacttgattctggataacataactaacaat |
30946203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 30952309 - 30952100
Alignment:
| Q |
40 |
ggaattccaagtaggggagaaagtcttactctgtaactccaaactaaag-----------aaaattaaattcaagatggtttagaccttgtgtgatttct |
128 |
Q |
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| T |
30952309 |
ggaattccaagtgggggagaaagtcttactctgtaactccaaactaaacctatttcctaaaaaattaaattcaagatggtttagaccttttgtgatttct |
30952210 |
T |
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| Q |
129 |
taagtcttctccaatggaacaattacattgacagaggattatgtatggaaattcaagttgaacgccaaagagtcaagcactacttgattttggataacat |
228 |
Q |
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| T |
30952209 |
caagtcttcccctatggaacaattacattgaaagaggattatgtatggaaattcaaggtgaacgccagagagtcaagcactacttgattctggataacat |
30952110 |
T |
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| Q |
229 |
aactaacaat |
238 |
Q |
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||| |||||| |
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| T |
30952109 |
aaccaacaat |
30952100 |
T |
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