View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_low_68 (Length: 234)
Name: NF1500_low_68
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_68 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 9883636 - 9883403
Alignment:
| Q |
1 |
ctcagactcacgaaactcttttatcttcactcgaagaacctgaatttcagcacttgtttcagcaagtttctcctcgagactttgtgtttcttcaggatca |
100 |
Q |
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|||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9883636 |
ctcagactcacgaaactcttttatcttctcttgaagaaccagaatttcagcacttgtttcagcaagtttcgcctcgagactttgtgtttcttcaggatca |
9883537 |
T |
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| Q |
101 |
tactcattcttcacttccatcaatttattatctatttcttcctttgaagttttgtaaaagtttaacttttcttctctttctcccatcactttaatctgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9883536 |
tactcattcttcacttccatcaatttattatctatttcttcctttgaagttttgtaaaagtttaacttttcttctctttctcccatcactttaatctgtt |
9883437 |
T |
|
| Q |
201 |
cttcttgtgcttgtgcagttgctagcttgagttc |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
9883436 |
cttcttgtgcttgtgcagttgctagcttgagttc |
9883403 |
T |
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