View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1500_low_75 (Length: 226)
Name: NF1500_low_75
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1500_low_75 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 7 - 184
Target Start/End: Original strand, 34463224 - 34463401
Alignment:
| Q |
7 |
gtttacaggtctctaaaaacatgttcaaatgatgttttcgagtaatctcactggattttatttggggtgatatggatcgaatgtaaaagccaaaatttta |
106 |
Q |
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| T |
34463224 |
gtttacaggtctctaaaaacatgttcaaatgatgttttcgggtaatctcactggattttatttggggtgatatggaacgaatgtaaaagccaaaatttta |
34463323 |
T |
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| Q |
107 |
gtcaaaaagtatcaaatttgtctcttatggttgaaaaaatcaagattcacgtgtggtgccggctaaaaccaaatctaa |
184 |
Q |
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| T |
34463324 |
gtcaaaaagtatcaaatttgtctcttatggttgaaaaaatcaagattcacgtgtggtgccggctaaaatcaaatctaa |
34463401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 12753222 - 12753262
Alignment:
| Q |
187 |
gtgtgtttgatttactaaaaaat-aaggacaggacaaaaca |
226 |
Q |
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| T |
12753222 |
gtgtgtttgatttgctaaaaaatgaaggacaggacaaaaca |
12753262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 32873652 - 32873694
Alignment:
| Q |
184 |
aaggtgtgtttgatttactaaaaaat-aaggacaggacaaaac |
225 |
Q |
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| T |
32873652 |
aaggtgtgtttgatttgctaaaaaatgaaggacaggacaaaac |
32873694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 11115079 - 11115038
Alignment:
| Q |
186 |
ggtgtgtttgatttactaaaaaat-aaggacaggacaaaaca |
226 |
Q |
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| T |
11115079 |
ggtgtgtttgatttgctaaaaaatgaaggacaggacaaaaca |
11115038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 21580237 - 21580197
Alignment:
| Q |
186 |
ggtgtgtttgatttactaaaaaataaggacaggacaaaaca |
226 |
Q |
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| T |
21580237 |
ggtgcgtttgatttgctaaaaaataaggacaggacagaaca |
21580197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 24571490 - 24571450
Alignment:
| Q |
187 |
gtgtgtttgatttactaaaaaat-aaggacaggacaaaaca |
226 |
Q |
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| T |
24571490 |
gtgtgtttgatttgctaaaaaatgaaggacaggacaaaaca |
24571450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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