View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1500_low_8 (Length: 512)

Name: NF1500_low_8
Description: NF1500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1500_low_8
NF1500_low_8
[»] chr5 (15 HSPs)
chr5 (18-299)||(25981247-25981528)
chr5 (18-308)||(3059081-3059370)
chr5 (18-299)||(34225785-34226067)
chr5 (18-215)||(14395839-14396036)
chr5 (191-295)||(26326941-26327045)
chr5 (210-296)||(33727426-33727512)
chr5 (210-296)||(33798705-33798791)
chr5 (211-284)||(11773293-11773366)
chr5 (249-299)||(14395786-14395836)
chr5 (211-296)||(13475557-13475642)
chr5 (227-296)||(971737-971806)
chr5 (239-284)||(39421297-39421342)
chr5 (244-296)||(423989-424041)
chr5 (237-269)||(2197647-2197679)
chr5 (244-296)||(9047491-9047543)
[»] chr4 (10 HSPs)
chr4 (18-300)||(2917616-2917897)
chr4 (444-505)||(24272499-24272564)
chr4 (227-296)||(4940061-4940130)
chr4 (227-296)||(15545053-15545122)
chr4 (211-296)||(47286607-47286692)
chr4 (235-301)||(53238464-53238530)
chr4 (231-287)||(26736571-26736627)
chr4 (246-292)||(42110021-42110067)
chr4 (211-284)||(18764660-18764733)
chr4 (245-286)||(35390408-35390449)
[»] chr1 (11 HSPs)
chr1 (18-299)||(50158702-50158981)
chr1 (18-299)||(38741095-38741376)
chr1 (121-297)||(33403639-33403824)
chr1 (175-299)||(2123579-2123703)
chr1 (187-296)||(11943668-11943777)
chr1 (18-110)||(2123706-2123798)
chr1 (211-296)||(32942269-32942354)
chr1 (227-296)||(37188202-37188271)
chr1 (261-301)||(18431237-18431277)
chr1 (261-296)||(5458623-5458658)
chr1 (244-296)||(22787427-22787479)
[»] chr8 (8 HSPs)
chr8 (18-299)||(29246832-29247112)
chr8 (211-286)||(35702120-35702195)
chr8 (222-293)||(14443048-14443119)
chr8 (227-296)||(11920631-11920700)
chr8 (217-296)||(7351396-7351475)
chr8 (210-292)||(5548508-5548592)
chr8 (243-296)||(16428095-16428148)
chr8 (244-296)||(45486339-45486391)
[»] chr3 (16 HSPs)
chr3 (121-299)||(50386050-50386228)
chr3 (18-299)||(497689-497971)
chr3 (227-296)||(7147179-7147248)
chr3 (227-296)||(22418844-22418913)
chr3 (136-296)||(27237346-27237506)
chr3 (227-296)||(43055292-43055361)
chr3 (227-296)||(49430482-49430551)
chr3 (187-299)||(3541693-3541804)
chr3 (232-296)||(40154756-40154820)
chr3 (244-303)||(36617921-36617980)
chr3 (18-53)||(50385965-50386000)
chr3 (231-292)||(51837497-51837558)
chr3 (244-296)||(25070855-25070907)
chr3 (244-296)||(26557630-26557682)
chr3 (244-296)||(26903067-26903119)
chr3 (244-296)||(28210883-28210935)
[»] chr7 (15 HSPs)
chr7 (121-297)||(46912926-46913102)
chr7 (187-296)||(36616868-36616977)
chr7 (190-298)||(46357783-46357891)
chr7 (229-296)||(42896852-42896919)
chr7 (209-289)||(18104496-18104576)
chr7 (18-88)||(46913331-46913401)
chr7 (229-292)||(4519742-4519805)
chr7 (227-296)||(46457683-46457752)
chr7 (211-295)||(33081854-33081938)
chr7 (231-294)||(5848787-5848850)
chr7 (227-292)||(28998311-28998376)
chr7 (211-286)||(31670593-31670668)
chr7 (229-295)||(43998120-43998186)
chr7 (227-294)||(23041601-23041670)
chr7 (244-296)||(38663350-38663402)
[»] chr2 (3 HSPs)
chr2 (149-299)||(917949-918099)
chr2 (229-299)||(41911797-41911867)
chr2 (226-284)||(9929322-9929380)
[»] chr6 (6 HSPs)
chr6 (189-301)||(595701-595813)
chr6 (227-296)||(6174377-6174446)
chr6 (208-296)||(843636-843724)
chr6 (211-294)||(13850731-13850814)
chr6 (244-296)||(16693593-16693645)
chr6 (244-301)||(18816824-18816881)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 25981247 - 25981528
Alignment:
Q  18 acatattagaacttctttcttggctcaatggtatgttttgatggacgaattgaatgtgctgagtttgattcctgacgagttgctattttgatgnnnnnnn 117  Q
    |||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||| || |||||||||||||||           
T  25981247 acatatcagaacttctttcttggctcaatggtatgtgctgatggacgaattgaatgtgctgagttcgattcctggcgtgttgctattttgatgttttttt 25981346  T
Q  118 nnnaaattacttgtattaaaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaatg 217  Q
       |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |    
T  25981347 tttaaattatttgtattaaaaaagggtgttgctgggaatcgaactagtaacaacaaggtaaaacgcagtcacccaaaccacttatctatagcatttaagg 25981446  T
Q  218 tatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 299  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25981447 tatcaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcgaatgtctagatccgcccatg 25981528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 3059081 - 3059370
Alignment:
Q  18 acatattagaacttctttcttggctcaatggtatgttttgatggacgaattgaatgtgctgagtttgattcctgacgagttgctattttgatgnnnnnnn 117  Q
    ||||||||||||||||||||||||||| ||||||||   ||||||||||||||||||| |||||| |||||||| || |||||||||||||||           
T  3059081 acatattagaacttctttcttggctcagtggtatgtgcggatggacgaattgaatgtgttgagttcgattcctggcgtgttgctattttgatgttttttt 3059180  T
Q  118 nnnaaattacttgtattaaaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaatg 217  Q
       |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||||| ||||||| |    
T  3059181 ta-aaattatttgtattaaaaaagggtgttgctgggaatcaaactagtaacaacaaggtaaaacgcagtcacccaaatcacttatctatagcatttaagg 3059279  T
Q  218 tatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatgaatggagag 308  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||    
T  3059280 tatcaatgttttactttgttaatatatatagttactttgaaagttttgccacaccaatatcaaatgtctagatccacccatggatgtagag 3059370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 34225785 - 34226067
Alignment:
Q  18 acatattagaacttctttcttggctcaatggtatgttttgatggacgaattg--aatgtgctgagtttgattcctgacgagttgctattttgatgnnnnn 115  Q
    ||||||||||||||||||||||||| | ||||||||   |||||| ||||||  |||||| |||||||||||||||  | |||||||||||||||         
T  34225785 acatattagaacttctttcttggcttagtggtatgtgcggatggatgaattgtgaatgtgttgagtttgattcctggtgtgttgctattttgatgttttt 34225884  T
Q  116 nnnnnaaattacttgtattaaaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaa 215  Q
         |||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||    
T  34225885 tttt-aaattatttgtattaaaaaagggtgttgctgggaatcgaactagtaacaacaaggtaaaatgcagtcacccaaaccacttatctataacatttaa 34225983  T
Q  216 tgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 299  Q
      |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34225984 gttatcaaagttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 34226067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 14396036 - 14395839
Alignment:
Q  18 acatatta-gaacttctttcttggctcaatggtatgttttgatggacgaattgaatgtgctgagtttgattcctgacgagttgctattttgatgnnnnnn 116  Q
    |||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||          
T  14396036 acatattatgaacttctttcttggctcaatggtatgtgctgatggacgaattgaatgtgctgagtttgattcctggcgagttgctattttgatgtttttt 14395937  T
Q  117 nnnnaaattacttgtattaaaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaa 215  Q
        |||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14395936 ttt-aaattacttgtattaaaaaagggtgttgctgggaattgaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctatagcatttaa 14395839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 191 - 295
Target Start/End: Original strand, 26326941 - 26327045
Alignment:
Q  191 caaaccatttatctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagat 290  Q
    |||||||||| ||||||   ||||| || |||||||| ||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||    
T  26326941 caaaccatttttctatattgtttaaagtgtcaatgttctactttgttaatatacatagtttctttgaaagttttgctacaccaatatcaaatgtctagat 26327040  T
Q  291 ccgcc 295  Q
    |||||    
T  26327041 ccgcc 26327045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 33727426 - 33727512
Alignment:
Q  210 atttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    |||||| || |||||| | ||||||||||||||||||| ||  |||||||||||| ||| |||||||||||||||||||||||||||    
T  33727426 atttaaagtgtcaatggtctactttgttaatatatatagttattttgaaagttttaccaaaccaatatcaaatgtctagatccgccc 33727512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 33798705 - 33798791
Alignment:
Q  210 atttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    |||||| || |||||| | ||||||||||||| ||||| ||  |||||||||||||||| |||||||||||||||||||||||||||    
T  33798705 atttaaagtgtcaatggtctactttgttaatacatatagttgttttgaaagttttgccaaaccaatatcaaatgtctagatccgccc 33798791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 11773293 - 11773366
Alignment:
Q  211 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgt 284  Q
    ||||| ||||||||| |||||||| ||||||||||||||| |||||||| |||||||||||||| |||||||||    
T  11773293 tttaaggtatcaatgctttactttattaatatatataattgctttgaaaattttgccacaccaaaatcaaatgt 11773366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 14395836 - 14395786
Alignment:
Q  249 tttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 299  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14395836 tttctttgaaagttttgccgcaccaatatcaaatgtctagatccgcccatg 14395786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 211 - 296
Target Start/End: Complemental strand, 13475642 - 13475557
Alignment:
Q  211 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    ||||| ||||||||  ||||||||||||||| ||||| ||  ||||||  |||||||||||||||||||||||||| |||||||||    
T  13475642 tttaaggtatcaattatttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgccc 13475557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 971806 - 971737
Alignment:
Q  227 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    ||||||||||||||| ||||| ||  |||||| |||||||||||| | |||||||||||| |||||||||    
T  971806 tttactttgttaataaatatagttgatttgaatgttttgccacactattatcaaatgtctggatccgccc 971737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 39421297 - 39421342
Alignment:
Q  239 atatatataatttctttgaaagttttgccacaccaatatcaaatgt 284  Q
    ||||||||| || |||||||||||||||||||||||||||||||||    
T  39421297 atatatatagttgctttgaaagttttgccacaccaatatcaaatgt 39421342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 424041 - 423989
Alignment:
Q  244 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    |||| ||||||| |||  |||||||||| ||||| ||||||||||||||||||    
T  424041 tatagtttctttaaaaaatttgccacactaatatgaaatgtctagatccgccc 423989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 2197647 - 2197679
Alignment:
Q  237 taatatatataatttctttgaaagttttgccac 269  Q
    ||||||||||| |||||||||||||||||||||    
T  2197647 taatatatatagtttctttgaaagttttgccac 2197679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 9047543 - 9047491
Alignment:
Q  244 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    |||| ||||||| |||  |||||||||| ||||| ||||||||||||||||||    
T  9047543 tatagtttctttaaaaaatttgccacactaatatgaaatgtctagatccgccc 9047491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 2917897 - 2917616
Alignment:
Q  18 acatattagaacttctttcttggctcaatggtatgttttgatggacgaattgaatgtgctgagtttgattcctgacgagttgctattttgatgnnnnnnn 117  Q
    |||||| |||||||||||||||||||| ||||||||   |||||| ||||||||||||||||||||||||||||  | |||||||||||||||           
T  2917897 acatatcagaacttctttcttggctcagtggtatgtgcggatggatgaattgaatgtgctgagtttgattcctggtgtgttgctattttgatgttttttt 2917798  T
Q  118 nnnaaattacttgtattaaaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaatg 217  Q
       |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| |||||||      
T  2917797 tt-aaattatttgtattaaaaaagggtgttgctgggaatcaaactagtaacaacaaggtaaaatgcagtcacccaaaccacttatctatagcatttaaga 2917699  T
Q  218 tatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatga 300  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2917698 tatcaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatga 2917616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 444 - 505
Target Start/End: Complemental strand, 24272564 - 24272499
Alignment:
Q  444 ttgtaaatttgttccacattatgaaatattaaatcggct----taccaggtgttatttgatgatgt 505  Q
    |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  24272564 ttgtaaatttgttccacattatgaaatattaaatcggcttacgtaccaggtgttatttgatgatgt 24272499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 296
Target Start/End: Original strand, 4940061 - 4940130
Alignment:
Q  227 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    ||||||||||||||||||||| || ||||| || |||||||||||||||||||| | |||||||||||||    
T  4940061 tttactttgttaatatatatagttcctttgcaaattttgccacaccaatatcaactctctagatccgccc 4940130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 296
Target Start/End: Original strand, 15545053 - 15545122
Alignment:
Q  227 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    ||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||||||    
T  15545053 tttactttgttaatatatatagttgctttgcaaattttgccacaccaatatcaactgtctggatccgccc 15545122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 211 - 296
Target Start/End: Complemental strand, 47286692 - 47286607
Alignment:
Q  211 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    ||||| ||||||||  ||||||||||||||| ||||| ||  ||||||  |||||||||||||||||||||||||| |||||||||    
T  47286692 tttaaggtatcaattatttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgccc 47286607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 53238464 - 53238530
Alignment:
Q  235 gttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatgaa 301  Q
    ||||||||||||| ||||||||| | ||| | |||||||||||| || |||||||||||| ||||||    
T  53238464 gttaatatatatagtttctttgatattttagtcacaccaatatcgaaagtctagatccgcacatgaa 53238530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 26736571 - 26736627
Alignment:
Q  231 ctttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtcta 287  Q
    |||| |||||||||||| ||||||||| | ||| ||||||||||||||||| |||||    
T  26736571 ctttattaatatatatagtttctttgatattttagccacaccaatatcaaaagtcta 26736627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 42110067 - 42110021
Alignment:
Q  246 taatttctttgaaagttttgccacaccaatatcaaatgtctagatcc 292  Q
    ||||| ||||||||||||||  ||||||||||||||||| |||||||    
T  42110067 taattactttgaaagttttgttacaccaatatcaaatgtatagatcc 42110021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 18764733 - 18764660
Alignment:
Q  211 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgt 284  Q
    ||||| ||||||||  ||||||||||||||||||||| || |||| | ||||||| || | |||||| ||||||    
T  18764733 tttaaggtatcaatactttactttgttaatatatatagttactttaacagttttgtcagatcaatattaaatgt 18764660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 35390449 - 35390408
Alignment:
Q  245 ataatttctttgaaagttttgccacaccaatatcaaatgtct 286  Q
    ||||||||||||||| ||| ||||||| ||||||||||||||    
T  35390449 ataatttctttgaaattttagccacactaatatcaaatgtct 35390408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 50158702 - 50158981
Alignment:
Q  18 acatattagaacttctttcttggctcaatggtatgttttgatggacgaattgaatgtgctgagtttgattcctgacgagttgctattttgatgnnnnnnn 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| || || |||||||||||||||           
T  50158702 acatattagaacttctttcttggctcaatggtatgtgttgatggatgaattgaatgtgctgagttcgattcttggcgtgttgctattttgatgttttttt 50158801  T
Q  118 nnnaaattacttgtattaaaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaatg 217  Q
       |||||| ||||||||||||||||||||||||| |||  ||||||||||||||||||||||| ||  ||||||||||| ||||||||| ||||||| |    
T  50158802 t--aaattatttgtattaaaaaagggtgttgctgggaattgaactagtaacaacaaggtaaaacacaatcacccaaaccacttatctatagcatttaagg 50158899  T
Q  218 tatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 299  Q
    |||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50158900 tatcaatgttttactttgttaatatatatggttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 50158981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 38741095 - 38741376
Alignment:
Q  18 acatattagaacttctttcttggctcaatggtatgttttgatggacgaattgaatgtgctgagtttgattcctgacgagttgctattttgatgnnnnnnn 117  Q
    ||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||  |||| ||  | ||| ||||||||||            
T  38741095 acatattagaacttctttcttggctcagtggtatgtgctgatggacgaattgaatgtgctgagttcaattcttggtgtgttcctattttgat-atatttt 38741193  T
Q  118 nnnaaattacttgtattaaaa-aagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaat 216  Q
       |||||| ||||||||||| |||||||||||||| |||  |||||||||||| |||||||||| ||  ||||||||||| ||||||||| |||||||     
T  38741194 tttaaattatttgtattaaaaaaagggtgttgctgggaattgaactagtaacaataaggtaaaacacaatcacccaaaccacttatctatagcatttaag 38741293  T
Q  217 gtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 299  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38741294 gtatcaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 38741376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 121 - 297
Target Start/End: Original strand, 33403639 - 33403824
Alignment:
Q  121 aaattacttgtattaaaaaagggtgttgctggcaatcaaact---------agtaacaacaaggtaaaacgcagccacccaaaccatttatctataacat 211  Q
    |||||| ||||||||||||||||||||||||| |||| ||||         ||||||||||||||||||| ||| ||||||||||| ||||||||| |||    
T  33403639 aaattatttgtattaaaaaagggtgttgctgggaatcgaactagtcgaactagtaacaacaaggtaaaacacagtcacccaaaccacttatctatagcat 33403738  T
Q  212 ttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccca 297  Q
    |||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  33403739 ttaaggtaacaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgccca 33403824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 175 - 299
Target Start/End: Complemental strand, 2123703 - 2123579
Alignment:
Q  175 gtaaaacgcagccacccaaaccatttatctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaa 274  Q
    ||||||||||| ||| ||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  2123703 gtaaaacgcagtcactcaaaccacttatctatagcatttaaggtatcaatgttttactttgttaatatatatagttgctttgaaagttttgtcacaccaa 2123604  T
Q  275 tatcaaatgtctagatccgcccatg 299  Q
    |||||||||||||||||||||||||    
T  2123603 tatcaaatgtctagatccgcccatg 2123579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 11943777 - 11943668
Alignment:
Q  187 cacccaaaccatttatctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtct 286  Q
    |||||||||||||||| | || ||||||| || |||||||||||||||||||||||||||| ||| ||||||| ||||||||||| ||||||||||||||    
T  11943777 cacccaaaccatttatatgtagcatttaaggtgtcaatgttttactttgttaatatatatagtttgtttgaaaattttgccacactaatatcaaatgtct 11943678  T
Q  287 agatccgccc 296  Q
    ||||||||||    
T  11943677 agatccgccc 11943668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 2123798 - 2123706
Alignment:
Q  18 acatattagaacttctttcttggctcaatggtatgttttgatggacgaattgaatgtgctgagtttgattcctgacgagttgctattttgatg 110  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||| | || |||||||||||||||    
T  2123798 acatattagaatttctttcttggctcaatggtatgtgctgatggacgaattgaatgtgctgagttcgattcccggcgtgttgctattttgatg 2123706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 211 - 296
Target Start/End: Original strand, 32942269 - 32942354
Alignment:
Q  211 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    ||||| ||||||||  ||||||||||||||| ||||| ||  ||||||  |||||||||||||||||||||||||| |||||||||    
T  32942269 tttaaggtatcaattatttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgccc 32942354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 296
Target Start/End: Original strand, 37188202 - 37188271
Alignment:
Q  227 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    ||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||||||    
T  37188202 tttactttgttaatatatatagttgctttgcaaattttgccacaccaatatcaattgtctggatccgccc 37188271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 18431277 - 18431237
Alignment:
Q  261 ttttgccacaccaatatcaaatgtctagatccgcccatgaa 301  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  18431277 ttttgccacactaatatgaaatgtctagatccgcccatgaa 18431237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 5458658 - 5458623
Alignment:
Q  261 ttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    ||||||||||||||||||||||||||| ||||||||    
T  5458658 ttttgccacaccaatatcaaatgtctacatccgccc 5458623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 22787479 - 22787427
Alignment:
Q  244 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    |||| ||||||| ||| ||||||||||| ||||| | ||||||||||||||||    
T  22787479 tatagtttctttaaaaattttgccacactaatatgacatgtctagatccgccc 22787427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 3e-80; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 29247112 - 29246832
Alignment:
Q  18 acatattagaacttctttcttggctcaatggtatgttttgatggacgaattgaatgtgctgagtttgattcctgacgagttgctattttgatgnnnnnnn 117  Q
    |||||| |||||||||||||| | ||  ||||||||   ||||||||||||||||||||||||||||||||||| || |||||||||||||||           
T  29247112 acatatcagaacttctttcttagatcggtggtatgtgcggatggacgaattgaatgtgctgagtttgattcctggcgtgttgctattttgatgttttttt 29247013  T
Q  118 nnnaaattacttgtattaaaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaatg 217  Q
       || ||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||  ||||||||||| ||||||||| ||||||| |    
T  29247012 tttaa-ttatttgtattaaaaaagggtgttgttgggaatcaaactagtaacaacaaggtaaaacacaatcacccaaaccacttatctatagcatttaagg 29246914  T
Q  218 tatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 299  Q
    |||||||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29246913 tatcaatgttatactttgttaatatatatagttgctttgaaagttttgccacatcaatatcaaatgtctagatccgcccatg 29246832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 211 - 286
Target Start/End: Original strand, 35702120 - 35702195
Alignment:
Q  211 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtct 286  Q
    ||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35702120 tttaaggtgtcaatgttttactttgttaatatatatagtttctttgaaagttttgccacaccaatatcaaatgtct 35702195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 14443048 - 14443119
Alignment:
Q  222 aatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccg 293  Q
    |||| ||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| ||||||    
T  14443048 aatgctttactttgttaatatatatagttactttgcaaattttgccacaccaatatcaactgtctggatccg 14443119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 11920700 - 11920631
Alignment:
Q  227 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    ||||| ||||||||||||||| |||||||| || ||| |||||||||||||||| | |||||||||||||    
T  11920700 tttacgttgttaatatatatagtttctttgcaaatttcgccacaccaatatcaactctctagatccgccc 11920631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 296
Target Start/End: Complemental strand, 7351475 - 7351396
Alignment:
Q  217 gtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    ||||||||  ||||||||||||||| ||||| ||  ||| ||  |||||||||||||||||||||||||| |||||||||    
T  7351475 gtatcaattatttactttgttaataaatatagttgatttaaatattttgccacaccaatatcaaatgtctggatccgccc 7351396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 5548508 - 5548592
Alignment:
Q  210 atttaatgtatcaatgttttactttgttaatatatat--aatttctttgaaagttttgccacaccaatatcaaatgtctagatcc 292  Q
    |||||| ||||||| | | |||||| |||||||||||  | ||||||||||||||||||||||| || ||||||||| |||||||    
T  5548508 atttaaagtatcaacgatctactttattaatatatatttagtttctttgaaagttttgccacactaacatcaaatgtttagatcc 5548592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 296
Target Start/End: Complemental strand, 16428148 - 16428095
Alignment:
Q  243 atataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||| |||||||||    
T  16428148 atatagtttatttgaaagttttgccacatcaatatcaaatgtctggatccgccc 16428095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 45486339 - 45486391
Alignment:
Q  244 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    |||| ||||||| ||| ||||||||||| |||||  |||||||||||||||||    
T  45486339 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgccc 45486391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 2e-72; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 121 - 299
Target Start/End: Original strand, 50386050 - 50386228
Alignment:
Q  121 aaattacttgtattaaaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaatgtat 220  Q
    |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||  ||||||||||| ||||||||| ||||||| ||||    
T  50386050 aaattatttgtattaaaaaagggtgttgctgggaatcgaactagtaacaacaaggtaaaacgcaatcacccaaaccacttatctatagcatttaaggtat 50386149  T
Q  221 caatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 299  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50386150 caatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 50386228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 497971 - 497689
Alignment:
Q  18 acatattagaacttctttcttggctcaatggtatgttttgatggacgaattg--aatgtgctgagtttgattcctgacgagttgctattttgatgnnnnn 115  Q
    |||||| |||||||||||||||||||| |||| |||   ||||||  |||||  ||||||||||||| |||||||| |  |||||||||||||||         
T  497971 acatatcagaacttctttcttggctcagtggtttgtgcggatggataaattgtgaatgtgctgagttcgattcctggcatgttgctattttgatgttttt 497872  T
Q  116 nnnnnaaattacttgtattaaaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaa 215  Q
         |||||| ||||||  ||||||||||||||||| |||| |||||||||||||||||| |||||||| ||||||||||| ||||||||| |||||||    
T  497871 tttt-aaattatttgtatctaaaaagggtgttgctgggaatcgaactagtaacaacaaggttaaacgcagtcacccaaaccacttatctatagcatttaa 497773  T
Q  216 tgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 299  Q
     |||| |||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||||||||||||    
T  497772 ggtattaatgttttactttgttaatatatatagttgatttgaaagttttgccacaccaatatcatatgtctagatccgcccatg 497689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 7147248 - 7147179
Alignment:
Q  227 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    |||| |||||||||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||    
T  7147248 tttattttgttaatatatatagtttctttgcaaattttgccacaccaatatcaactgtctagatccgccc 7147179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 296
Target Start/End: Original strand, 22418844 - 22418913
Alignment:
Q  227 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    ||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||||||    
T  22418844 tttactttgttaatatatatagttgctttgcaaattttgccacaccaatatcaattgtctggatccgccc 22418913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 296
Target Start/End: Complemental strand, 27237506 - 27237346
Alignment:
Q  136 aaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaatgtatcaatgttttactttg 235  Q
    |||||||||||||| |  |||| |||  | ||||| | ||||||| ||  ||||| | |||||||  |||||  ||||||  |||||||  |||||||||    
T  27237506 aaaaagggtgttgcagagaatcgaacctgcaacaaaatggtaaaatgcttccacctataccatttcactatattatttaagatatcaattatttactttg 27237407  T
Q  236 ttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    |||||| ||||| ||  ||||||  |||||||||||||||||||||||||| |||||||||    
T  27237406 ttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgccc 27237346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 43055361 - 43055292
Alignment:
Q  227 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    |||| ||| |||||||||||| |||||||| || |||||||||||||||||||| | |||||||||||||    
T  43055361 tttaatttattaatatatatagtttctttgcaaattttgccacaccaatatcaactctctagatccgccc 43055292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 49430551 - 49430482
Alignment:
Q  227 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    ||||||||||||||||||||| |||||||  || ||||| |||||||||||||| | |||||||||||||    
T  49430551 tttactttgttaatatatatagtttctttacaaattttgtcacaccaatatcaactctctagatccgccc 49430482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 3541804 - 3541693
Alignment:
Q  187 cacccaaaccatttatctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtct 286  Q
    |||||||||||||| |||| |  ||||||  | |||||| || ||||| |||||||||||| || |||||||| ||||| ||||||||||||||||||||    
T  3541804 cacccaaaccattt-tctagactatttaagttgtcaatgcttcactttattaatatatatagttactttgaaaattttgtcacaccaatatcaaatgtct 3541706  T
Q  287 agatccgcccatg 299  Q
      ||||| |||||    
T  3541705 gcatccgtccatg 3541693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 40154820 - 40154756
Alignment:
Q  232 tttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    |||||||||||||||| ||||||||| | ||| ||||||| ||||||||| |||||| |||||||    
T  40154820 tttgttaatatatatagtttctttgatattttagccacactaatatcaaaagtctaggtccgccc 40154756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 36617921 - 36617980
Alignment:
Q  244 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatgaatg 303  Q
    |||| ||||||| ||| ||||||||||| |||||  ||||||||||||||||| ||||||    
T  36617921 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgcccctgaatg 36617980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 50385965 - 50386000
Alignment:
Q  18 acatattagaacttctttcttggctcaatggtatgt 53  Q
    |||||| |||||||||||||||||||||||||||||    
T  50385965 acatatcagaacttctttcttggctcaatggtatgt 50386000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 51837558 - 51837497
Alignment:
Q  231 ctttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatcc 292  Q
    |||||||||||||||| |||||||||| | |||  ||| | |||||||||| ||||||||||    
T  51837558 ctttgttaatatatattatttctttgatattttatccaaatcaatatcaaaagtctagatcc 51837497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 25070855 - 25070907
Alignment:
Q  244 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    |||| ||||||| ||| ||||||||||| |||||  |||||||||||||||||    
T  25070855 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgccc 25070907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 26557630 - 26557682
Alignment:
Q  244 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    |||| ||||||| ||| ||||||||||| ||||| | ||||||||||||||||    
T  26557630 tatagtttctttaaaaattttgccacactaatatgacatgtctagatccgccc 26557682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 26903119 - 26903067
Alignment:
Q  244 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    |||| ||||||| ||| ||||||||||| |||||  |||||||||||||||||    
T  26903119 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgccc 26903067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 28210935 - 28210883
Alignment:
Q  244 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    |||| ||||||| ||| ||||||||||| |||||  |||||||||||||||||    
T  28210935 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgccc 28210883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 2e-66; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 46913102 - 46912926
Alignment:
Q  121 aaattacttgtattaaaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaatgtat 220  Q
    |||||| ||||||||||||||||||||||||| |||  |||||||||||| |||||||||| ||| ||||||||||| ||||||||| ||||||| ||||    
T  46913102 aaattatttgtattaaaaaagggtgttgctgggaattgaactagtaacaataaggtaaaacacagtcacccaaaccacttatctatagcatttaaggtat 46913003  T
Q  221 caatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccca 297  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  46913002 caatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgccca 46912926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 36616977 - 36616868
Alignment:
Q  187 cacccaaaccatttatctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtct 286  Q
    |||||||||||||||||| || ||||||| |||  |||||||||||||||||||||||||| ||| ||||||| |||| |||||||||||||||||||||    
T  36616977 cacccaaaccatttatctgtagcatttaaggtaagaatgttttactttgttaatatatatagtttgtttgaaaattttaccacaccaatatcaaatgtct 36616878  T
Q  287 agatccgccc 296  Q
    ||||||||||    
T  36616877 agatccgccc 36616868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 190 - 298
Target Start/End: Complemental strand, 46357891 - 46357783
Alignment:
Q  190 ccaaaccatttatctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctaga 289  Q
    |||||||||||  |||||   ||||| || |||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46357891 ccaaaccattttgctatactgtttaaagtgtcaatggtctactttgttaatatatatagtttctttgaaagttttgccacaccaatatcaaatgtctaga 46357792  T
Q  290 tccgcccat 298  Q
    |||||||||    
T  46357791 tccgcccat 46357783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 42896919 - 42896852
Alignment:
Q  229 tactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  42896919 tactttgttaatatatatagtttttttaaaagttttgccacaccaatatcaaatgtctagatccgccc 42896852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 209 - 289
Target Start/End: Original strand, 18104496 - 18104576
Alignment:
Q  209 catttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctaga 289  Q
    |||||||||||||||||| ||||||| |||||||||||| ||| ||| ||| ||||| |||||||||||||||||||||||    
T  18104496 catttaatgtatcaatgtgttactttattaatatatatagtttgtttcaaaattttgtcacaccaatatcaaatgtctaga 18104576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 46913401 - 46913331
Alignment:
Q  18 acatattagaacttctttcttggctcaatggtatgttttgatggacgaattgaatgtgctgagtttgattc 88  Q
    ||||||||||||||||||||||||| | ||||||||  ||||||||||||||||||||||||||| |||||    
T  46913401 acatattagaacttctttcttggcttagtggtatgtgctgatggacgaattgaatgtgctgagttcgattc 46913331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 4519742 - 4519805
Alignment:
Q  229 tactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatcc 292  Q
    ||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||    
T  4519742 tactttgttaatatatatagttgctttgcaagttttgtcacaccaatatcaaatgtctagatcc 4519805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 46457752 - 46457683
Alignment:
Q  227 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    ||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||||||    
T  46457752 tttactttgttaatatatatagttactttgcaaattttgccacaccaatatcaactgtctggatccgccc 46457683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 295
Target Start/End: Original strand, 33081854 - 33081938
Alignment:
Q  211 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcc 295  Q
    ||||| ||||||||  ||||||||||||||| ||||| ||  ||||||  |||||||||||||||||||||||||| ||||||||    
T  33081854 tttaaggtatcaattatttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgcc 33081938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 5848787 - 5848850
Alignment:
Q  231 ctttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgc 294  Q
    ||||||||||||||||||||| ||||| | ||| | ||||||||||||||| ||||||||||||    
T  5848787 ctttgttaatatatataatttatttgatattttagtcacaccaatatcaaaagtctagatccgc 5848850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 28998311 - 28998376
Alignment:
Q  227 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatcc 292  Q
    ||||||||||||||||||||| || ||||| || |||||||| ||||||||||| ||||| |||||    
T  28998311 tttactttgttaatatatatagttgctttgcaaattttgccataccaatatcaattgtctggatcc 28998376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 286
Target Start/End: Original strand, 31670593 - 31670668
Alignment:
Q  211 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtct 286  Q
    ||||| || ||||| |||||||||||||||||||||| ||  |||| || ||||  ||||||||||||||||||||    
T  31670593 tttaaggtgtcaatattttactttgttaatatatatagttgttttggaaattttatcacaccaatatcaaatgtct 31670668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 43998186 - 43998120
Alignment:
Q  229 tactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcc 295  Q
    ||||||||||||||||||| || ||||| || ||||| |||||||||||||| | ||| ||||||||    
T  43998186 tactttgttaatatatatagttactttgcaaattttgtcacaccaatatcaactctctggatccgcc 43998120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 23041670 - 23041601
Alignment:
Q  227 tttactttgttaatatatataa--tttctttgaaagttttgccacaccaatatcaaatgtctagatccgc 294  Q
    |||||||||||||||||||||   || ||||  || |||||||||||||||||||| ||||| |||||||    
T  23041670 tttactttgttaatatatatatagttgcttttcaaattttgccacaccaatatcaactgtctggatccgc 23041601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 38663350 - 38663402
Alignment:
Q  244 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    |||| ||||||| ||| ||||||||||| |||||  |||||||||||||||||    
T  38663350 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgccc 38663402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 8e-56; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 149 - 299
Target Start/End: Original strand, 917949 - 918099
Alignment:
Q  149 ctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaatgtatcaatgttttactttgttaatatatataa 248  Q
    |||| |||| ||||||||||||||||||||||||||  ||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||     
T  917949 ctgggaatcgaactagtaacaacaaggtaaaacgcaatcacccaaaccacttatctatagcatttaaggtatcaatgttttactttgttaatatatatag 918048  T
Q  249 tttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 299  Q
    || ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  918049 ttgctttgaaagttttgccacaccaatatcaaatgtttagatccgcccatg 918099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 41911797 - 41911867
Alignment:
Q  229 tactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 299  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41911797 tactttgttaatatatattgttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 41911867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 9929322 - 9929380
Alignment:
Q  226 ttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgt 284  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  9929322 ttttactttgttaatatatatattttctttgaaagttttgccacaccaaaatcaaatgt 9929380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 189 - 301
Target Start/End: Original strand, 595701 - 595813
Alignment:
Q  189 cccaaaccatttatctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctag 288  Q
    |||||||||||||||| || |||||||  |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| ||||||||||||||||    
T  595701 cccaaaccatttatctgtagcatttaagatatcaatgttttactttgttaatatatatagtttgtttgaaaattttgccacactaatatcaaatgtctag 595800  T
Q  289 atccgcccatgaa 301  Q
    |||| ||| ||||    
T  595801 atccacccctgaa 595813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 6174446 - 6174377
Alignment:
Q  227 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    ||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||||||    
T  6174446 tttactttgttaatatatatagttgctttgcaaattttgccacaccaatatcaactgtctggatccgccc 6174377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 296
Target Start/End: Original strand, 843636 - 843724
Alignment:
Q  208 acatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    |||||||| || |||||| | |||||| |||||||||||| ||  ||| ||||||||| |||||||||||||||||| |||||||||||    
T  843636 acatttaaagtgtcaatggtctactttattaatatatatagttgttttaaaagttttgtcacaccaatatcaaatgtttagatccgccc 843724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 13850731 - 13850814
Alignment:
Q  211 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgc 294  Q
    ||||| ||||||||  ||||||||||||||| ||||| ||  ||||||  |||||||||||||||||||||||||| |||||||    
T  13850731 tttaaggtatcaattatttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgc 13850814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 16693593 - 16693645
Alignment:
Q  244 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 296  Q
    |||| ||||||| ||| ||||||||||| ||||| ||||||||||||||||||    
T  16693593 tatagtttctttaaaaattttgccacactaatatgaaatgtctagatccgccc 16693645  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 18816881 - 18816824
Alignment:
Q  244 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatgaa 301  Q
    |||| ||||||| ||| ||||||||||| |||||  ||||||||||||||||| ||||    
T  18816881 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgcccctgaa 18816824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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