View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15010_high_1 (Length: 599)

Name: NF15010_high_1
Description: NF15010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15010_high_1
NF15010_high_1
[»] chr6 (8 HSPs)
chr6 (71-318)||(16396656-16396904)
chr6 (342-589)||(16396412-16396669)
chr6 (3-77)||(16396923-16396997)
chr6 (1-77)||(16399710-16399786)
chr6 (256-337)||(30351445-30351529)
chr6 (99-145)||(16399624-16399670)
chr6 (346-386)||(14312861-14312900)
chr6 (25-69)||(15942726-15942770)
[»] chr8 (2 HSPs)
chr8 (1-76)||(14308058-14308133)
chr8 (326-365)||(9040920-9040959)
[»] chr4 (2 HSPs)
chr4 (255-318)||(5979790-5979854)
chr4 (291-355)||(4873089-4873155)
[»] chr2 (1 HSPs)
chr2 (256-317)||(13793680-13793742)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-116; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 71 - 318
Target Start/End: Complemental strand, 16396904 - 16396656
Alignment:
Q  71 tacaagttaaagggtatatgagaattgagaaaatattcatatatgtgaatgagcaccgagttttctgtgttttgaaaatattacatgaaagaacaatagt 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16396904 tacaagttaaagggtatatgagaattgagaaaatattcatatatgtgaatgagcaccgagttttctgtgttttgaaaatattacatgaaagaacaatagt 16396805  T
Q  171 agagtttgcttaccatgtccacgatgtagcaatgctgccactcttgaaatacatgtacctaaaacaagtggagatttcttttctaacatccattgttacc 270  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||       
T  16396804 agagtttgcttaccatgtccatgatgtagcaatgctgccactcttgaaatacatgtacctaaaacaagtggagattgcttttctaacatccattgttttt 16396705  T
Q  271 tagaaacacgtggaaa-gactaaaaacaccccaacggtagttaactacc 318  Q
    |||||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  16396704 tagaaatacgtgaaaatgactaaaaacaccccaacggtagttaactacc 16396656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 342 - 589
Target Start/End: Complemental strand, 16396669 - 16396412
Alignment:
Q  342 ggtagttaactaccgttgagttttattttgtcatttccatatgtttatagaaaattcttgtcgtgtgcgaacaacaacactcaaacaagtgtaccacgtt 441  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| |  ||    
T  16396669 ggtagttaactaccgctgagtttttttttgtcatttccatatatttatagaaaattcttgttgtgtgcgaacaacaacactcaaacaaatgtacaaaatt 16396570  T
Q  442 tgaaacaattaaaaggccaaagcccatataacac-----------nnnnnnnnnnccaccctgctaccattacattatagaataggtgagaaataaagat 530  Q
    ||||||||||||||||||||| | ||||||||||                      ||||||||||||||||||||||||||||||||||||||||||||    
T  16396569 tgaaacaattaaaaggccaaacctcatataacacaaaaaaaaaaaaaaaaaaaaatcaccctgctaccattacattatagaataggtgagaaataaagat 16396470  T
Q  531 cctctcttattacactgagtaacataaaatcaagactattactttttcccaccctatgc 589  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  16396469 cctctcttattacactgagtaacaaaaaatcaagactattac-ttttcccaccctatgc 16396412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 16396997 - 16396923
Alignment:
Q  3 tttgacactcataagatgatgaaaatttgttgttgaactccaaaagggtctttctgtagaaatttacctacaagt 77  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16396997 tttgacactcataagatgataaaaatttgttgttgaactccaaaagggtctttctgtagaaatttacctacaagt 16396923  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 16399786 - 16399710
Alignment:
Q  1 ggtttgacactcataagatgatgaaaatttgttgttgaactccaaaagggtctttctgtagaaatttacctacaagt 77  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |  |  ||||||||||||| |||||||    
T  16399786 ggtttgacactcataagatgataaaaatttgttgttgaactccaaaaggtttctgttgtagaaatttacgtacaagt 16399710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 30351445 - 30351529
Alignment:
Q  256 acatccattgttacctagaaacacgtggaaa-gactaaaaacaccccaacggtagttaactacctttaact--taactagaaaac 337  Q
    ||||| |||||| ||||||||||  || ||| ||| ||||||||||||||||||||||||||| | |||||  ||||||||||||    
T  30351445 acatctattgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataactagaaaac 30351529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 16399670 - 16399624
Alignment:
Q  99 gaaaatattcatatatgtgaatgagcaccgagttttctgtgttttga 145  Q
    |||||||| ||||||||| |||||| ||||||||||| |||||||||    
T  16399670 gaaaatatacatatatgtaaatgagtaccgagttttcggtgttttga 16399624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 14312900 - 14312861
Alignment:
Q  346 gttaactaccgttgagttttattttgtcatttccatatgtt 386  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  14312900 gttaactaccgttgagtttt-tttggtcatttccatatgtt 14312861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 15942726 - 15942770
Alignment:
Q  25 aaatttgttgttgaactccaaaagggtctttctgtagaaatttac 69  Q
    |||||||||||||||||||||| ||||| || || ||||||||||    
T  15942726 aaatttgttgttgaactccaaaggggtccttttgcagaaatttac 15942770  T

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Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 14308058 - 14308133
Alignment:
Q  1 ggtttgacactcataagatgatgaaaatttgttgttgaactccaaaagggtctttctgtagaaatttacctacaag 76  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||| |   |||||||||||| ||||||    
T  14308058 ggtttgacactcataagatgatgaaaaattgttgttgaattccaaaagggtcctgtagtagaaatttacgtacaag 14308133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 365
Target Start/End: Original strand, 9040920 - 9040959
Alignment:
Q  326 taactagaaaactgatggtagttaactaccgttgagtttt 365  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  9040920 taactagaaaactgatgatagttaactaccgctgagtttt 9040959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 5979854 - 5979790
Alignment:
Q  255 aacatccattgttacctagaaacacgtggaaa-gactaaaaacaccccaacggtagttaactacc 318  Q
    ||||| ||||||| | ||||||||  |||||| ||| ||||||||||||||||||||||||||||    
T  5979854 aacattcattgtttcttagaaacaaatggaaatgaccaaaaacaccccaacggtagttaactacc 5979790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 4873089 - 4873155
Alignment:
Q  291 aaaaacaccccaacggtagttaactacctttaactta--actagaaaactgatggtagttaactacc 355  Q
    ||||||||  || |||||||||||||||  | |||||  ||||||||||||||||||||||||||||    
T  4873089 aaaaacacttcagcggtagttaactaccgctgacttataactagaaaactgatggtagttaactacc 4873155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 13793680 - 13793742
Alignment:
Q  256 acatccattgttacctagaaacacgtg-gaaagactaaaaacaccccaacggtagttaactac 317  Q
    |||||||||||| | ||||||||  || ||| ||| |||||||||||||||||||||||||||    
T  13793680 acatccattgtttcttagaaacatatgagaatgaccaaaaacaccccaacggtagttaactac 13793742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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