View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15010_low_1 (Length: 450)
Name: NF15010_low_1
Description: NF15010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15010_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 12 - 396
Target Start/End: Original strand, 2140126 - 2140514
Alignment:
| Q |
12 |
ataggtactttatttgtgtgacattaatagtcctgtttttgtacaattatttttcaattagcatgaatcattgtgttcatcattgtacttgttgcttgat |
111 |
Q |
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| T |
2140126 |
ataggtactttatttgtgtgacattaatagtcctgtttttgtacaattatttttcaattagcatgaatcattgtgttcatcattgtacttgttgcttgat |
2140225 |
T |
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| Q |
112 |
gtgaaatatgaagaacaatactgtatatagtaggataccattgactaataatcgagtattttaatttaacaatgaagcccagatacctggggtcaataga |
211 |
Q |
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| T |
2140226 |
gtgaaatatgaagaacaatactgtatatagtaggataccattgactaataatcgagtattttaatttaacaatgaagcccagatacctggggtcaataga |
2140325 |
T |
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| Q |
212 |
gaggctaatacaattggccttatgttactgcatgcatatttataccacaataggcaac-----tcagttcaaagagaggggatgtagtatctattgattt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
2140326 |
gaggctaatacaattggccttatgttactgcatgcatatttataccacaattggcaactcagatcagatcaaagagaggggatgtagtatctattgattt |
2140425 |
T |
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| Q |
307 |
tgagacctacttttaaccttcacccttttcttgtttgaataagtaaattcagatacacacagtgtgaggtttttaagaatcatgcggggt |
396 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2140426 |
tgagacctac-tataaccttcacccttttcttgtttgaataagtaaattcagatacacacagtgtgaggtttttaagaatcatgcggggt |
2140514 |
T |
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