View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15011_high_3 (Length: 232)
Name: NF15011_high_3
Description: NF15011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15011_high_3 |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: scaffold0121 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 28751 - 28537
Alignment:
| Q |
17 |
ttagtttttctaggtggttatgaaattttaggggtcattaattatttatcttaagtctatagtggatgttagttttcaatggatacactcatcacaaatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28751 |
ttagtttttctaggtggttatgaaattttaggggtcattaattatttatcttaagtctatagtggatgttagttttcaatggatacactcatcataaatc |
28652 |
T |
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| Q |
117 |
aaaatgcctcggtctctatgacctcacttgtgccaaacgtgcacataaaatatctaatgtggaccaccgaccaaaccactatgaaaagtgaaatgaatga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28651 |
aaaatgcctcggtctctatgacctcacttgtgccaaacgtgcacataaaatatctaatgtggaccaccgacc-aaccactatgaaaagtgaaatgaatga |
28553 |
T |
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| Q |
217 |
aacaatataaaagtga |
232 |
Q |
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|||||||||||||||| |
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| T |
28552 |
aacaatataaaagtga |
28537 |
T |
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