View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15011_low_1 (Length: 489)

Name: NF15011_low_1
Description: NF15011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15011_low_1
NF15011_low_1
[»] scaffold0001 (1 HSPs)
scaffold0001 (15-135)||(12444-12564)
[»] chr6 (3 HSPs)
chr6 (13-143)||(11681970-11682100)
chr6 (12-101)||(18985578-18985667)
chr6 (13-60)||(11681842-11681889)
[»] chr5 (1 HSPs)
chr5 (12-101)||(23919850-23919939)
[»] chr8 (2 HSPs)
chr8 (12-101)||(30344110-30344199)
chr8 (452-489)||(29481995-29482032)
[»] chr7 (5 HSPs)
chr7 (62-143)||(25350428-25350509)
chr7 (62-143)||(25356122-25356203)
chr7 (13-74)||(33098112-33098173)
chr7 (13-60)||(25350264-25350311)
chr7 (13-60)||(25355958-25356005)
[»] chr4 (2 HSPs)
chr4 (56-143)||(1967812-1967899)
chr4 (13-58)||(1967593-1967638)


Alignment Details
Target: scaffold0001 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 12564 - 12444
Alignment:
Q  15 aaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacctcctctcaaggat 114  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||    
T  12564 aaacaacattgtaggaggaacacctaaatcgaatagcagcttgtcgccctcttgtaggtaattgtccctaacaaattgtaaccaacctcctcccaaggat 12465  T
Q  115 ttttcagctttgttacgctca 135  Q
    |||||||||||||||||||||    
T  12464 ttttcagctttgttacgctca 12444  T

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Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 11681970 - 11682100
Alignment:
Q  13 acaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacctcctctcaagg 112  Q
    |||||||||| |||||||   ||||| ||||||||||||  ||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  11681970 acaaacaacattgtaggaaagacacccaaatcaaatagctacttgtcgtcctcttgtaggtgattgtccctaacaaactggaaccaacctcctcccaagg 11682069  T
Q  113 atttttcagctttgttacgctcaacggtaat 143  Q
    |||||||||| |||||||||||| |||||||    
T  11682070 atttttcagccttgttacgctcagcggtaat 11682100  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 18985578 - 18985667
Alignment:
Q  12 cacaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacc 101  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18985578 cacaaacaacactgtaggaggaacacctaaatcgaatagcagcttgtcgtcctcttgtaggtgattgtccctaacaaattggaaccaacc 18985667  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 11681842 - 11681889
Alignment:
Q  13 acaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcg 60  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  11681842 acaaacaacattgtaggaggaacacctaaatcaaatagcagcttgtcg 11681889  T

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Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 23919939 - 23919850
Alignment:
Q  12 cacaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacc 101  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23919939 cacaaacaacactgtaggaggaacacctaaatcgaatagcagcttgtcgtcctcttgtaggtgattgtccctaacaaattggaaccaacc 23919850  T

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Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 30344199 - 30344110
Alignment:
Q  12 cacaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacc 101  Q
    |||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30344199 cacaaacaacactgtaggagtaacacctaaatcgaataacagcttgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacc 30344110  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 452 - 489
Target Start/End: Complemental strand, 29482032 - 29481995
Alignment:
Q  452 aaacaccaccgcagctccaaatactacaaacccatcac 489  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  29482032 aaacaccaccgcaactccaaatactacaaacccatcac 29481995  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 25350428 - 25350509
Alignment:
Q  62 cctcttgtaggtgattgtccctaacaaattggaaccaacctcctctcaaggatttttcagctttgttacgctcaacggtaat 143  Q
    |||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||| |||||||||||| |||||||    
T  25350428 cctcttgtaggtgattgtccctaacaaactggaaccaacctcttcccaaggatttttcagccttgttacgctcagcggtaat 25350509  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 25356122 - 25356203
Alignment:
Q  62 cctcttgtaggtgattgtccctaacaaattggaaccaacctcctctcaaggatttttcagctttgttacgctcaacggtaat 143  Q
    |||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||| |||||||||||| |||||||    
T  25356122 cctcttgtaggtgattgtccctaacaaactggaaccaacctcttcccaaggatttttcagccttgttacgctcagcggtaat 25356203  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 33098112 - 33098173
Alignment:
Q  13 acaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcgccctcttgtaggtg 74  Q
    |||||||||| ||||||||||||| | ||||| |||||||||||||| ||||||||||||||    
T  33098112 acaaacaacattgtaggaggaacatccaaatcgaatagcagcttgtcaccctcttgtaggtg 33098173  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 25350264 - 25350311
Alignment:
Q  13 acaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcg 60  Q
    ||||||||||||| |||||||||||| ||||| || ||||||||||||    
T  25350264 acaaacaacactgcaggaggaacacccaaatcgaaaagcagcttgtcg 25350311  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 25355958 - 25356005
Alignment:
Q  13 acaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcg 60  Q
    ||||||||||||| |||||||||||| ||||| || ||||||||||||    
T  25355958 acaaacaacactgcaggaggaacacccaaatcgaaaagcagcttgtcg 25356005  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 1967812 - 1967899
Alignment:
Q  56 tgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacctcctctcaaggatttttcagctttgttacgctcaacggtaat 143  Q
    ||||| ||||||||||||| |||||||||||||| |||||||||||||||| ||| |||||||||   |||||||||||| |||||||    
T  1967812 tgtcgtcctcttgtaggtggttgtccctaacaaactggaaccaacctcctcccaatgatttttcaagcttgttacgctcagcggtaat 1967899  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 1967593 - 1967638
Alignment:
Q  13 acaaacaacactgtaggaggaacacctaaatcaaatagcagcttgt 58  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  1967593 acaaacaacactgtaggaggaacacccaaatcaaatagcagcttgt 1967638  T

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