View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15011_low_4 (Length: 236)
Name: NF15011_low_4
Description: NF15011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15011_low_4 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 470 - 668
Alignment:
| Q |
14 |
agatgaaaaaagaatttaaaacacttattacaacannnnnnnaggactatagtttctgactcataaagnnnnnnnnagattataattgttattatgttgg |
113 |
Q |
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| T |
470 |
agatgaaaaaagaatttaaaacacttattacaacatttttttaggactatagtttctgactcataaagttttttttagattataattgttattatgttgg |
569 |
T |
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| Q |
114 |
tatttattttttgtcataattcgagccctgaatatttacctctcaatcaaatggactactcaaaacatacaacgtatacaccttatatatgattatctt |
212 |
Q |
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| T |
570 |
tatttatcttttgtcatgattcgagctctgaacatttacctctcaacaaaatgaattactcaaaacatacaacgtatacaccttatatatgattatctt |
668 |
T |
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Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 21451805 - 21452003
Alignment:
| Q |
14 |
agatgaaaaaagaatttaaaacacttattacaacannnnnnnaggactatagtttctgactcataaagnnnnnnnnagattataattgttattatgttgg |
113 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21451805 |
agatgaaaaaagaatttaaaacacttattacaacatttttttaggactatagtttctgactcataaagttttttttagattataattgttattatgttgg |
21451904 |
T |
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| Q |
114 |
tatttattttttgtcataattcgagccctgaatatttacctctcaatcaaatggactactcaaaacatacaacgtatacaccttatatatgattatctt |
212 |
Q |
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||||||| ||||||||| |||||||| ||||| ||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21451905 |
tatttatcttttgtcatgattcgagctctgaacatttacctctcaacaaaatgaattactcaaaacatacaacgtatacaccttatatatgattatctt |
21452003 |
T |
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