View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15012_high_3 (Length: 286)
Name: NF15012_high_3
Description: NF15012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15012_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 270
Target Start/End: Original strand, 4200850 - 4201099
Alignment:
| Q |
21 |
aagtctgggttcaaattgcatgtcttggtgcttcaacatttattttgtctggttaaatctggtgtgctgactgagcctctgtgggatgctgatacatgtt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4200850 |
aagtctgggttcaaattgcatgtcttggtacttcaacatttattttgtctggctaaatccggtgcgctgactgagcctctatgggatgctgatacatgtt |
4200949 |
T |
|
| Q |
121 |
catatccataccgaaataatgttgcttttgtacgcatcatgacaataaaacttttaagcacttcatttcccaacattgattttatggaggttatccaatt |
220 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
4200950 |
catatccataccaaagtaatgttgcttttgtacgcatcatgacaataaaacttttaagcagttcatttcccaactttgatgttatggaggttatccaatt |
4201049 |
T |
|
| Q |
221 |
tgttgataaactctttgcggctacaaatgacctctccacattcaaaactt |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4201050 |
tgttgataaactctttgcggctacaaatgacctctccacattcaaaactt |
4201099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 1529669 - 1529725
Alignment:
| Q |
17 |
tcataagtctgggttcaaattgcatgtcttggtgcttcaacatttattttgtctggt |
73 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1529669 |
tcataagcctgggttcaaattgcatgtcttggtgcttcaacatttattatgtctggt |
1529725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 196
Target Start/End: Original strand, 1529805 - 1529925
Alignment:
| Q |
76 |
aatctggtgtgctgactgagcctctgtgggatgctgatacatgttcatatccataccgaaataatgttgcttttgtacgcatcatgacaataaaactttt |
175 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| |||| |||||||||||||| || ||||| ||||||||| ||| ||||| |||||||| |
|
|
| T |
1529805 |
aatctggtgccctgactgagcctctatgggatgctgctacaaattcatatccatacccaagtaatggtgcttttgtgcgcgagtacacaattaaactttt |
1529904 |
T |
|
| Q |
176 |
aagcacttcatttcccaacat |
196 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
1529905 |
aagcacgtcatttcccaacat |
1529925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 1530021 - 1530082
Alignment:
| Q |
208 |
aggttatccaatttgttgataaactctttgcggctacaaatgacctctccacattcaaaact |
269 |
Q |
| |
|
|||||| |||||||||| || ||| |||| | | ||||||||||||||||||||||||||| |
|
|
| T |
1530021 |
aggttacccaatttgttaatggactttttgagtccacaaatgacctctccacattcaaaact |
1530082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 29740954 - 29740898
Alignment:
| Q |
17 |
tcataagtctgggttcaaattgcatgtcttggtgcttcaacatttattttgtctggt |
73 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||||||||| ||||| ||||||||||| |
|
|
| T |
29740954 |
tcataagcctgggttcaaattacatgtcctggtgcttcagcatttgttttgtctggt |
29740898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University