View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15012_low_4 (Length: 280)
Name: NF15012_low_4
Description: NF15012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15012_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 51854995 - 51854744
Alignment:
| Q |
19 |
actacactacactagcttttgttgctgttgtcaatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatctt |
118 |
Q |
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||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51854995 |
actaccctacactagcttttgttgctgttgttaatcaaattggtggtgatggccaagtcatttgtccaattcaattttattttcatagttagaaaatctt |
51854896 |
T |
|
| Q |
119 |
caagagctaaatgcctaattcagtttcatagttggataagctcaagtactattgctagaccaatatgaaggagcaatactctgcaacattttgtcaaagc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51854895 |
caagagctaaatgcctaattcagtttcatagttggataagctcaagtactatttctagaccaatatgaaggagcaatactctgcaacattttgtcaaagc |
51854796 |
T |
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| Q |
219 |
gaaagaaattgaatatgggtgatatgctttgacagttgatcaacaacctttg |
270 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51854795 |
gaaagaaattgaatatgggtgatatgctttgacagtcgatcaacaacctttg |
51854744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 8944230 - 8943979
Alignment:
| Q |
19 |
actacactacactagcttttgttgctgttgtcaatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatctt |
118 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8944230 |
actacactacactagcttttgttgctgttgttaatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatctt |
8944131 |
T |
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| Q |
119 |
caagagctaaatgcctaattcagtttcatagttggataagctcaagtactattgctagaccaatatgaaggagcaatactctgcaacattttgtcaaagc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
8944130 |
caagagctaaatgcctaattcagtttcatagttggataatctcaagtactattgctagatcaatatgaaggagcaatactctgcaacatttagtcaaagc |
8944031 |
T |
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| Q |
219 |
gaaagaaattgaatatgggtgatatgctttgacagttgatcaacaacctttg |
270 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
8944030 |
gaaagaaattgaatatgggtgatatgctttgacagtcgataaacaacctttg |
8943979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 26887429 - 26887666
Alignment:
| Q |
19 |
actacactacactagcttttgttgctgttgtcaatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatctt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
26887429 |
actacactacactagcttttgttgctgttgttaatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttaaaaaacctt |
26887528 |
T |
|
| Q |
119 |
caagagctaaatgcctaattcagtttcatagttggataagctcaagtactattgctagaccaatatgaaggagcaatactctgcaacattttgtcaaagc |
218 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26887529 |
caagaactaaatgcctaattcagtttcatagttggataagctcaagtactattgctagaccaatatgaaggagcaatactctgcaacattttgtcaaagc |
26887628 |
T |
|
| Q |
219 |
gaaagaaattgaatatgggtgatatgctttgacagttg |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
26887629 |
gaaagaaattgaatatgggtgatatgctttgacagttg |
26887666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 26887667 - 26887712
Alignment:
| Q |
210 |
tgtcaaagcgaaagaaattgaatatgggtgatatgctttgacagttg |
256 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
26887667 |
tgtcaaagcgaaagaa-ttgaatatggatgatatgctttgacagttg |
26887712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 27 - 159
Target Start/End: Complemental strand, 21988965 - 21988833
Alignment:
| Q |
27 |
acactagcttttgttgctgttgtcaatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatcttcaagagct |
126 |
Q |
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|||||| |||| ||||||||||| ||||||| ||||||||||||||||| |||||| | |||||||||||| |||||||||||||||| | || |||||| |
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| T |
21988965 |
acactaactttagttgctgttgttaatcaaactggtggtgatggctaagccatttgcctaattcaattttaatttcatagttagaaaaccatcgagagct |
21988866 |
T |
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| Q |
127 |
aaatgcctaattcagtttcatagttggataagc |
159 |
Q |
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|||||||||||||| ||| ||||||||| |||| |
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| T |
21988865 |
aaatgcctaattcaattttatagttggaaaagc |
21988833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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