View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15012_low_6 (Length: 251)
Name: NF15012_low_6
Description: NF15012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15012_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 5829986 - 5829756
Alignment:
| Q |
18 |
tatataatttatacagaagtggaagatttataaaaaagaagaagccatgtctctatcatcccttttgattcaccaaactacgtactgttgaaagaatggc |
117 |
Q |
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| T |
5829986 |
tatataatttatacagaagtggaagatttataaaaaagaagaagccatgtctctatcatcccttttgatccacctaactacgtactgttgaaagaatggc |
5829887 |
T |
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| Q |
118 |
tttgcatgaaagaaagagtcccacaccaccaaagtgtatcatgtttaacaaagacaaaacttaagagttaaatcatcagcaaattattatgtatatcatg |
217 |
Q |
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| T |
5829886 |
tttgcatgaaagaaagagtcccacaccaccaaagtgtatcatgtttaacaaagacaaaacttaagagttaaatcatcagcaaattattatgtatatcatg |
5829787 |
T |
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| Q |
218 |
ttttaccaaacatgttgaaaactttcttcat |
248 |
Q |
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| T |
5829786 |
ttttaccaaacatgttgaaaactttcttcat |
5829756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 5880691 - 5880549
Alignment:
| Q |
18 |
tatataatttatacagaagtggaagatttataaaaaa--gaagaagccatgtctctatcatcccttttgattcaccaaactacgtactgttgaaagaatg |
115 |
Q |
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| T |
5880691 |
tatataatttatacagaaatggaagatttataaaaaaaagaagaagccatgtctctgtcattccttttgatttacctaactacgtactgttgaaagaatg |
5880592 |
T |
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| Q |
116 |
gctttgcatgaaagaaagagtcccacaccaccaaagtgtatca |
158 |
Q |
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| T |
5880591 |
gctttgcatgaaagaaagagtcccacaccaccaaagtatatca |
5880549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 5880512 - 5880469
Alignment:
| Q |
161 |
tttaacaaagacaaaacttaagagttaaatcatcagcaaattat |
204 |
Q |
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| T |
5880512 |
tttaacagagacaaaacttaagagttaaatcatcagcaaattat |
5880469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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