View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15012_low_7 (Length: 250)
Name: NF15012_low_7
Description: NF15012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15012_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 34958090 - 34957875
Alignment:
| Q |
20 |
acataagcaaaaaatatgaaaaagcactgtttcaccaagttcaacatttttgtggattcttgcagcaccaagaagcgccccccaaacggatccatcagct |
119 |
Q |
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| T |
34958090 |
acataagcaaaaaatatgaaaaagcactgtttcaccaagttcaacatttttgtggattcttgcagcaccaagaagcgcccctcaaacggatccatcagct |
34957991 |
T |
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| Q |
120 |
tcaaatggaatggaattcataagttccaccgcttcatttagtttccctgatttccaaggatatcaatcatgcaagcatagtgctcttgtgttggtttgat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34957990 |
tcaaatggaatggaattcataagttccaccgcttcatttagtttccctaatttccaaggatatcaatcatgcaagcatagtgctcttgtgttggtttgat |
34957891 |
T |
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| Q |
220 |
tccaaacttttcctcc |
235 |
Q |
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|||||||||||||||| |
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| T |
34957890 |
tccaaacttttcctcc |
34957875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 50131576 - 50131761
Alignment:
| Q |
51 |
tcaccaagttcaacatttttgtggattcttgcagcaccaagaagcgccccccaaacggatccatcagcttcaaatggaatggaattcataagttccaccg |
150 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| | |
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| T |
50131576 |
tcaccaagttcaacatttttgtggattcttgcagcaccaagaagcgccccccaaacggatccatcggcttcaaatggaatggaattcacaagctccactg |
50131675 |
T |
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| Q |
151 |
cttcatttagtttccctgat-ttccaaggatatcaatcatgcaagcatagtgctcttgtgttggtttgattccaaacttttcctcc |
235 |
Q |
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| T |
50131676 |
cttcatttagtttccctgatcttccaaggagatcaatcatgcaagcatggtgctcttgtgttggtttgattccaaacttttcctcc |
50131761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 3922551 - 3922584
Alignment:
| Q |
20 |
acataagcaaaaaatatgaaaaagcactgtttca |
53 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
3922551 |
acataagcaaaaaatatgaaaaagcactgcttca |
3922584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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