View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15013_high_4 (Length: 227)
Name: NF15013_high_4
Description: NF15013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15013_high_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 35808287 - 35808505
Alignment:
| Q |
9 |
atcatcaattggaaaaccaaatcattcatgtagttcttatttattagcatatacaacagaagcactccttttgattaatcacacaattcagaacaattac |
108 |
Q |
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| T |
35808287 |
atcataaattggaaaaccaaatcattcatgtagttcttatttattagcatatacaacagaagcactccttttgattaatcacacaattcagaacaattac |
35808386 |
T |
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| Q |
109 |
aacaaaataagggaaagggggtgataacagcattaaaatatataaggaatttgaacgaaatcatcgacagtttcatttcgagtaaacgattgagacgaag |
208 |
Q |
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| T |
35808387 |
aacaaaataagggaaagggggtgataacagcattaaaatatataaggaatttgaacgaaatcatcgacagtttcatttcgagtaaacgattgagacgaag |
35808486 |
T |
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| Q |
209 |
aactgtgacttaaattatc |
227 |
Q |
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||||||||||||||||||| |
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| T |
35808487 |
aactgtgacttaaattatc |
35808505 |
T |
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