View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15013_low_1 (Length: 581)
Name: NF15013_low_1
Description: NF15013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15013_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Complemental strand, 40188392 - 40187842
Alignment:
| Q |
1 |
aattcacaaaagcatgatcataccaaagatgatccatgcacttcatcaaaatgttcacccatgcaacctttagcagtagaagctactcaaattcatgaaa |
100 |
Q |
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| T |
40188392 |
aattcacaaaagcatgatcataccaaagatgatccatgcacttcatcaaaatgttcacccatgcaacctttagcagtagaagctactcaaattcatgaaa |
40188293 |
T |
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| Q |
101 |
gcaaaggtggaaaattagacaaaggtaggaaacatttgggagctggtggcattgttggaattatctttggtgttgcatttgttgtggttttagctatgag |
200 |
Q |
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| T |
40188292 |
gcaaaggtggaaaattagacaaaggtaggaaacatttgggagctggtggcattgttggaattatctttggtgttgcatttgttgtggttttagctatgag |
40188193 |
T |
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| Q |
201 |
tgtgtatcatgttagagtcacacgtaaagccaacatgattagagctaaagctaataatagtgttcaaccacctgtttgatgtaccttgtcnnnnnnnata |
300 |
Q |
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| T |
40188192 |
tgtgtatcatgttagagtcacacgtaaagccaacatgattagagctaaagctaataatagtgttcaaccacctgtttgatgtaccttgtctttttttata |
40188093 |
T |
|
| Q |
301 |
tatgaattaaagtttagacgagtcgagtctcgggaactcatcagagtcaaaagcctcaaagttgttagattgttgacatgattaattacattttatatat |
400 |
Q |
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| T |
40188092 |
tatgaattaaagtttaaacgagttgagtctcgggaactcatcagagttaaaagcctcaaagttaatagattgttgacatgactacttatatcttatatat |
40187993 |
T |
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| Q |
401 |
ctatcaatgagatcctcacatcggcaacaagattcaaactcaggtccttgtaagaattgaatccttatcaactggaccaacc-acgtatgcttgacatgc |
499 |
Q |
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| T |
40187992 |
ccgtcaatgagatcctcacatcggcaacaagattcaaactcagatccttgtaagaattgaattcttatcaactggaccaaccaacgtatgcttgacatgc |
40187893 |
T |
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| Q |
500 |
cttagcttatataatcatttcaaaaccttgtggcatataattaattaatta |
550 |
Q |
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| T |
40187892 |
cttagcttatataattatttcaaaaccttgtggcatataattaattaatta |
40187842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 451
Target Start/End: Complemental strand, 8108959 - 8108914
Alignment:
| Q |
406 |
aatgagatcctcacatcggcaacaagattcaaactcaggtccttgt |
451 |
Q |
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| T |
8108959 |
aatgaggtcctcacattggcaataagattcaaactcaggttcttgt |
8108914 |
T |
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