View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15013_low_2 (Length: 567)
Name: NF15013_low_2
Description: NF15013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15013_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 310 - 549
Target Start/End: Original strand, 26306367 - 26306606
Alignment:
| Q |
310 |
gaaaaacaactaacatggaaaaacccaaaagagatctttgtctctctgccggcatgctggtaaaagaactgttaccaaaacatatcaacgtataatactg |
409 |
Q |
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| T |
26306367 |
gaaaaacaactaacatggaaaaacccaaaagagatctttgtctctctgccggcatgctggtaaaagaactgttaccaaaacatatcaacgtataatactg |
26306466 |
T |
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| Q |
410 |
atatctttatcatatagtattataatataaggtaaatataatgcaggcctaatgctacataacacaagataacaagaactttacatagataaaattaaag |
509 |
Q |
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| T |
26306467 |
atatctttatcatatagtattataatataaggtaaatataatgcaggcctaatgctacataacacaagataacaagaactttacatagataaaattaaag |
26306566 |
T |
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| Q |
510 |
agtgagaatcatcgagataagagaaatgtaagaaagtgat |
549 |
Q |
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| T |
26306567 |
agtgagaatcatcgagataagagaaatgtaagaaagtgat |
26306606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 26306069 - 26306216
Alignment:
| Q |
14 |
agatgaagaacacgaatgagatgaggatgttctgcatgaccacccatgtgactaaggaagtagattatgtgaagccttctaacttctccaccttttgttt |
113 |
Q |
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| T |
26306069 |
agatgaagaacacgaatgagatgaggatgttctgcatgaccacccatgtgactaaggaagtagattatgtgaagccttctaacttctccaccttttgttt |
26306168 |
T |
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| Q |
114 |
ccatgcttgtttttgatgaacttgttttgttgttatctttgctgtaat |
161 |
Q |
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| T |
26306169 |
ccatgcttgtttttgatgaacttgttttgttgttatctttgctgtaat |
26306216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 781468 - 781550
Alignment:
| Q |
14 |
agatgaagaacacgaatgagatgaggatgttctgcatgaccacccatgtgactaaggaagtagattatgtgaagccttctaac |
96 |
Q |
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| T |
781468 |
agatgaagaacacgaaagagatgaggctgttctgaatgaccacgcatgtgactaaggaagtacattatatgaagcattctaac |
781550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 46209350 - 46209455
Alignment:
| Q |
18 |
gaagaacacgaatgagatgaggatgttctgcatgaccacccatgtgactaaggaagtagattatgtgaagccttctaacttctccaccttttgtttccat |
117 |
Q |
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| T |
46209350 |
gaagaacactaatgagacgataatgttctgcaaaaccacccatgtagctaaataagcagattatgtgaagccttctaactt---cacactttgcttccat |
46209446 |
T |
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| Q |
118 |
gcttgtttt |
126 |
Q |
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| T |
46209447 |
gcttgtttt |
46209455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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