View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15013_low_3 (Length: 483)
Name: NF15013_low_3
Description: NF15013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15013_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 219 - 465
Target Start/End: Complemental strand, 41293443 - 41293197
Alignment:
| Q |
219 |
caaataatagttttgctgaagcgcctctaaagcagggatgacaaaatggatcaacccatcacatttgatcctggttgtgattaacttgtctataatatgg |
318 |
Q |
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| T |
41293443 |
caaataatagttttgctgaagcgcccctaaagcagggatgacaaaatggatcaacccatcacatttgatcctggttgtgattaatttgtctataatatgg |
41293344 |
T |
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| Q |
319 |
caatgcatgttgagttaagaagcttggttgaaaatcacacagaaccatggattggagtgtcgaccctccaatagcaaaaagaaaacacacgaaaggtgct |
418 |
Q |
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| T |
41293343 |
caatgcatgttgaattaagaagcttggttgaaaatcacacagaaccatggattggggtgtcgaccctccaatagcaaaaagaaaacacacgaaaggtgct |
41293244 |
T |
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| Q |
419 |
gattatttgaagaactgacgggttagcacaaaaaataggtgagacat |
465 |
Q |
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| T |
41293243 |
gattatttgaagaactgacgggttagcacaaaaaataggtgagacat |
41293197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 4 - 205
Target Start/End: Complemental strand, 41293889 - 41293689
Alignment:
| Q |
4 |
gggtagattattctttatttaaagagaagtttaatgagaaaagcttctnnnnnnnttgatatgggaatggccaagagctaattttatcttattagaagaa |
103 |
Q |
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| T |
41293889 |
gggttgattattctttatttaaagagaattttaatgagaaaagcttctaaaaaa-ttgatatgggaatggccaagagctaattttatcttattagaagaa |
41293791 |
T |
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| Q |
104 |
atgttagttgttattgtacaagtgggaggagttaaatttggtgatctccttatatcactttgatttctatatcactacgttcaaaccactaacaaggtac |
203 |
Q |
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| T |
41293790 |
atgttagttgttattgtataagtgggaggagttaaatttggtgatctccttatatcactttgatttctatatcattatgttcaaaccactaacaaggtac |
41293691 |
T |
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| Q |
204 |
aa |
205 |
Q |
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| T |
41293690 |
aa |
41293689 |
T |
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