View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15013_low_5 (Length: 432)
Name: NF15013_low_5
Description: NF15013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15013_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Original strand, 31308728 - 31309121
Alignment:
| Q |
18 |
aggccatttattccttcttttgaaaggttgggagaatattaattaattaatnnnnnnnnnnnnnttctaaaattctcactggccactacaactacaattc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31308728 |
aggccatttattccttcttttgaaaggttgggagaatattaattaattaataaaaaataaaatattctaaaattctcactggccactacaactacaattc |
31308827 |
T |
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| Q |
118 |
cgggtcattccaatcacaacccatgcttccgtcgactttctcctttcactattctctcaattattcttccattccaattccatggtagcttcaaccatcg |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31308828 |
cgggtcattccaatcacaccccatgcttccgtcgactttcccctttcactattctctcaattattcttccattccaattccatggtagcttcaaccatcg |
31308927 |
T |
|
| Q |
218 |
caacacagtaaccaaatctcacaccccccttttttctcaaaaaccctccaaccttcatcaccaatggcaacaagaagatccatacccctcctcaaacacc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31308928 |
caacacagtaaccaaatctcacaccccccttttttctcaaaaaccccccaaccttcatcaccaatggcaacaagaagatccatacccctcctcaaacacc |
31309027 |
T |
|
| Q |
318 |
tcctctcaacccgatcccaatccgaaccattcactatctcaaagcgatgtgtaacctacatgcaccgtcccggcgatggaaccccccgtcccgt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
31309028 |
tcctctcaacccgatcccaatccgaaccattcactatctcaaagcgatgcgtaacctacatgcaccgtcccggcgacggaactccccgtcccgt |
31309121 |
T |
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