View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15013_low_7 (Length: 277)
Name: NF15013_low_7
Description: NF15013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15013_low_7 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 48100573 - 48100331
Alignment:
| Q |
16 |
ataattctattaaaagtaacaacttattttagtatccgtaaataatcttaaaaagacaattaattaatgtgacacttaactgatgagatcaggaatattg |
115 |
Q |
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| T |
48100573 |
ataatcctattaaaagtaacaacttattttagtatgcgtaaataatcttaaaaagacaattaattaatgtgacacttaactgataagatcaggaatattg |
48100474 |
T |
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| Q |
116 |
agaccattggagaatcgaccggttggcctaccggtcggataatcaattccataaggaggagaatcagccctagcagtagttaccaaataattgttgttgc |
215 |
Q |
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| T |
48100473 |
agaccattggagaatcgaccggttggcctaccggtcggataatcaattccataaggaggagaatcagccctagcagtagttaccaaataattgttgttgc |
48100374 |
T |
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| Q |
216 |
cactgtcaacaagtgaatcaccaaatacaaagaaagccctttg |
258 |
Q |
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| T |
48100373 |
cactgtcaacaagtgaatcaccaaatacaaagaaagccctttg |
48100331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 252
Target Start/End: Complemental strand, 1807398 - 1807235
Alignment:
| Q |
89 |
acttaactgatgagatcaggaatattgagaccattggagaatcgaccggttggcctaccggtcggataatcaattccataaggaggagaatcagccctag |
188 |
Q |
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| T |
1807398 |
acttagctgataagatcaggaatattgaagccatttgaaaaacgaccagttggtttacgagttggataatcaattccataaggaggagaatcagcacgag |
1807299 |
T |
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| Q |
189 |
cagtagttaccaaataattgttgttgccactgtcaacaagtgaatcaccaaatacaaagaaagc |
252 |
Q |
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| T |
1807298 |
cagttgtaagcaaataattgttatttccattatcaacaagtgaatctccaaatacaaaaaaagc |
1807235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 252
Target Start/End: Complemental strand, 48091591 - 48091429
Alignment:
| Q |
90 |
cttaactgatgagatcaggaatattgagaccattggagaatcgaccggttggcctaccggtcggataatcaattccataaggaggagaatcagccctagc |
189 |
Q |
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| T |
48091591 |
cttaactgatgaagtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataaggaggagcatcagctcgagc |
48091492 |
T |
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| Q |
190 |
agtagttaccaaataattgttgttgccactgtcaacaagtgaatcaccaaatacaaagaaagc |
252 |
Q |
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| T |
48091491 |
agtagttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaaagc |
48091429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 246
Target Start/End: Complemental strand, 48074473 - 48074379
Alignment:
| Q |
152 |
ggataatcaattccataaggaggagaatcagccctagcagtagttaccaaataattgttgttgccactgtcaacaagtgaatcaccaaatacaaa |
246 |
Q |
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| T |
48074473 |
ggataatcaatgccataagggtaagaatcagcacgagcagtggttgctaagtagttattgttgccattgtcaacaagtgaatcaccaaaaacaaa |
48074379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 29769753 - 29769853
Alignment:
| Q |
152 |
ggataatcaattccataaggaggagaatcagccctagcagtagttaccaaataattgttgttgccactgtcaacaagtgaatcaccaaatacaaagaaag |
251 |
Q |
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| T |
29769753 |
ggataatcgatgccataaggaggagagtcggcacgtgccgtggttagcaaataattattgttgccactgtcaacaagtgagtcaccaaaaacaaagaaag |
29769852 |
T |
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| Q |
252 |
c |
252 |
Q |
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| T |
29769853 |
c |
29769853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 146298 - 146336
Alignment:
| Q |
202 |
ataattgttgttgccactgtcaacaagtgaatcaccaaa |
240 |
Q |
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| T |
146298 |
ataattgttgttaccactgtcaacaagggaatcaccaaa |
146336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 36700346 - 36700384
Alignment:
| Q |
202 |
ataattgttgttgccactgtcaacaagtgaatcaccaaa |
240 |
Q |
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| T |
36700346 |
ataattgttgttaccactgtcaacaagggaatcaccaaa |
36700384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 7388254 - 7388350
Alignment:
| Q |
153 |
gataatcaattccataaggaggagaatcagccctagcagtagttaccaaataattgttgttgccactgtcaacaagtgaatcaccaaatacaaagaa |
249 |
Q |
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| T |
7388254 |
gataatcaataccataagggggtgcatcagcacgtgcagtagtagccaagtaattgttatttccattatcaacaagtgaatctccaaacactaagaa |
7388350 |
T |
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