View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15014_high_1 (Length: 601)
Name: NF15014_high_1
Description: NF15014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15014_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 18 - 595
Target Start/End: Complemental strand, 41150695 - 41150113
Alignment:
| Q |
18 |
caaacatgtattagacataacgaacaaaggtaaaattctaactaacctttccttggtgtaacgcatttagggcatgctcaatggaagagtaccctttaga |
117 |
Q |
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| T |
41150695 |
caaacatgtattagacataacgaacaaaggtaaaattctaactaacctttccttggtgtaacgcatttagggcatgctcaatggaagagtatcctttaga |
41150596 |
T |
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| Q |
118 |
gggacaatctggatcaccttcagcttcactcacaaagaaatcatcggtttcttgctttatttctttttcggcgtttaacgtttttaagagggatccattt |
217 |
Q |
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| T |
41150595 |
gggacaatctggatcaccttcagcttcactcacgaagaaatcatcggtttcttgctttatttctttttcggcgtttaacgtttttaagagggatccattt |
41150496 |
T |
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| Q |
218 |
tcattttccttcaaatcaccactatcatcaaacacgtcttcagttccaaccttagaaaacccaatagcataaaaagccaaatttctcaccttgttgttcc |
317 |
Q |
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| T |
41150495 |
tcattttccttcaaatcaccactatcatcaaacacgtcttcagttccaaccttagaaaacccaatagcataaaaagccaaatttctcaccttgttgttcc |
41150396 |
T |
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| Q |
318 |
acaggccaaatcttgcactatgatgagtagtgcatgaccgatgcaagctttgaataaatagaaaaatttaacacgagttcaacaaatagaagaacaatta |
417 |
Q |
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| T |
41150395 |
acaggccaaatcttgcactatgatgagtagtgcatgaccgatgcaagctttgaataaatagaaaaatttaacacgagttcaacaaatagaagaacaatta |
41150296 |
T |
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| Q |
418 |
agagtgttgtgttatctagagaaataaaaatatgtaccttgaattggtgatgacgtgggaaatcaaaggactggggaatgaagcagagtccataggcagt |
517 |
Q |
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| T |
41150295 |
agagtgttgtgttatctagagaaataaaaatatgtaccttgaattggtgatgacgtgggaaatcaaaggaccggggaatgaagcagagtccataggcagt |
41150196 |
T |
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| Q |
518 |
gatatcaaattttctattcttagaaaattgaaggaaaga------atgtactcaaaaattgtgttcttaattatttcatctcac |
595 |
Q |
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| T |
41150195 |
gatatcaaa-tttctattcttagaaaattgaaggaaagaaaaagtatgtactcaaaaattgtgttcttaattatttcatgtcac |
41150113 |
T |
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