View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15014_high_2 (Length: 593)
Name: NF15014_high_2
Description: NF15014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15014_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 17 - 593
Target Start/End: Original strand, 46448292 - 46448868
Alignment:
| Q |
17 |
acttgctagaagagaaaagaatgctggaataaaacctgatgaagaccttgatttattcatgaaggcacatactcattcnnnnnnncttccctttaatggg |
116 |
Q |
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| T |
46448292 |
acttgctagaagagaaaagaatgctggaataaaacctgatgaagaccttgatttattcatgaaggcacatactcattctttttttcttccctttaatggg |
46448391 |
T |
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| Q |
117 |
aaaatatctcgnnnnnnnnccttttcaaaataaacattgtaaactgcattcatggacacaaattaatctactcaagatgcattttgcagtcattagctct |
216 |
Q |
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| T |
46448392 |
aaaatatctcgttttttttccttttcaaaataaacattgtaaactgcattcatggacacaaattaatctactcaagatgcattttgcagtcattagctct |
46448491 |
T |
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| Q |
217 |
cggtggacaggaaacaaatcttgtggttgagtacatcatgaaggtatccctaaatactgttactctttgatgcacagtgagttgtcatgtgattgtgacc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46448492 |
cggtggacaggaaacaaatcttgtggttgagtacatcatgaaggtatccctaaatactgttactcttggatgcacagtgagttgtcatgtgattgtgacc |
46448591 |
T |
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| Q |
317 |
tgaaatatttgttgccttgnnnnnnnnnnnnnnnnnnnnnnnnnactaatggaatttgtgatataaaataaaattgtggagataccaatgacttgcaaag |
416 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46448592 |
tgaaatatttgttgccttgttttttattttggaatactttttttactaatggaattcgtgatataaaataaaattgtggagataccaatgacttgcaaag |
46448691 |
T |
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| Q |
417 |
aatcctaaaaacacaattgtggacatctaataaagaagtnnnnnnntccccagagcctaattccaacatgtgattaacttctttggcaagttatctnnnn |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46448692 |
aatcctaaaaacacaattgtggacatctaataaagaagtaaaaaaatccccagagcctaattccaacatgtgattaacttctttggcaagttatctaaaa |
46448791 |
T |
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| Q |
517 |
nnnntattcataagctcaattatgtgtgtatgtatatgattatttcattgtttagttctaagtacgaaaatatttct |
593 |
Q |
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| T |
46448792 |
aaaatattcataagctcaattatgtgtgtatgtatatgattatttcattgtttagttctaagtacgaaaatatttct |
46448868 |
T |
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