View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15014_low_3 (Length: 382)
Name: NF15014_low_3
Description: NF15014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15014_low_3 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: scaffold0050 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 36077 - 35885
Alignment:
| Q |
13 |
catcaaaaccacaacaaccaccccttatggtgccaacaccaataacccctcattgtaaactcaagaagaccccatgaaagacaaaaggttcgaatggccg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36077 |
catcaaaaccacaacaaccaccccttatggtgccaacaccaataacccctcattgtaaactcaagaagaccccatgaaagacaaaaggttcgaatggcag |
35978 |
T |
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| Q |
113 |
gaaccaagcaaatctaagaatgagggaaaacacaccacctaagaaatacaaggagagcaatccacactaactcaaagtctacaaagaaccctc |
205 |
Q |
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| T |
35977 |
gaaccaagcaaatctaagaatgagggaaaacacaccacctaagaaatacaaggagagcaatccacactaactcaaagtctacaaagaagcctc |
35885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 14193217 - 14193030
Alignment:
| Q |
13 |
catcaaaaccacaacaaccaccccttatggtgccaacaccaataacccctcattgtaaactcaagaagaccccatgaaagacaaaaggttcgaatggccg |
112 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||||||| ||||||||||||||| ||||||| ||||||| | |
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| T |
14193217 |
catcaaaaccacaacaaccacctcttatggtgccaacaccaatagctgcgcattgtaaactcaagatgaccccatgaaagactaaaggtttgaatggcag |
14193118 |
T |
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| Q |
113 |
gaaccaagcaaatctaagaatgagggaaaacacaccacctaagaaatacaaggagagcaatccacactaactcaaagtctacaaagaa |
200 |
Q |
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| T |
14193117 |
gaaccaagcaaatatatgattgagggaaaacacaccacctaagaaatacaaggagaacaacccacactaacccaaagtctacaaagaa |
14193030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 25646965 - 25646778
Alignment:
| Q |
13 |
catcaaaaccacaacaaccaccccttatggtgccaacaccaataacccctcattgtaaactcaagaagaccccatgaaagacaaaaggttcgaatggccg |
112 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| || ||||||||||||||| ||||||| ||||||| | |
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| T |
25646965 |
catcaaaagcacaacaaccaccccttatggtgccaacaccaatagccgctcattgtaaactcacgatgaccccatgaaagactaaaggtttgaatggcag |
25646866 |
T |
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| Q |
113 |
gaaccaagcaaatctaagaatgagggaaaacacaccacctaagaaatacaaggagagcaatccacactaactcaaagtctacaaagaa |
200 |
Q |
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||||||| ||||||| || |||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||| |
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| T |
25646865 |
aaaccaagaaaatctatgattgagggaaaacacaccacctaagaaatacaaggagaacaacccacactaacccaaagtctacaaagaa |
25646778 |
T |
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