View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15014_low_4 (Length: 317)
Name: NF15014_low_4
Description: NF15014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15014_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 5689833 - 5690122
Alignment:
| Q |
17 |
agcatgaggctcaagagccttagcagcaggagaagcttcaacagcagtagaaggctcaacatgcttaccaagaagctcttgtggcaaatccttaatacct |
116 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5689833 |
agcatgaggctcaagagctttagcagcaggagaagcttcaacagcaggagaaggctcaacatgtttaccaagaagctcttgtggcaaatccttaatacct |
5689932 |
T |
|
| Q |
117 |
ctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaatattccagaaccaccagtcacag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5689933 |
ctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaatattccagaaccaccagtcacag |
5690032 |
T |
|
| Q |
217 |
ctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatctccaaaatggaaactgtagattgcttcat |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5690033 |
ctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatcaccaaaatggaaactgtagattgcttcat |
5690122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 25914517 - 25914803
Alignment:
| Q |
17 |
agcatgaggctcaagagccttagcagcaggagaagcttcaacagcagtagaaggctcaacatgcttaccaagaagctcttgtggcaaatccttaatacct |
116 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
25914517 |
agcatgtggctcaagagctttagcagcaggagaagcttcaacattagggttaggctcaactggtttaccaagaagctcttgtggcaaatccttaataccc |
25914616 |
T |
|
| Q |
117 |
ctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaatattccagaaccaccagtcacag |
216 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||| | ||||||||| || ||||||||||||| ||||||| |||||||||||||| |
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| T |
25914617 |
ttcaaataaaatgtgtagaaaatcttaaatggaaaaacaatttgattgagcttcacttggcctgtaacaccttcaaaaattccagtaccaccagtcacag |
25914716 |
T |
|
| Q |
217 |
ctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatctccaaaatggaaactgtagattgcttcat |
306 |
Q |
| |
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|||||| |||||||| |||||||| || |||||||| || |||| |||||||| ||||||| || ||||||||||||||||||| |
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| T |
25914717 |
ttagatatgtgtcctc---ataggttaggtaaggtccttgcacagctatttgaccatagtctccaacgtgaaaactgtagattgcttcat |
25914803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 68 - 306
Target Start/End: Complemental strand, 6792803 - 6792565
Alignment:
| Q |
68 |
aggctcaacatgcttaccaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaac |
167 |
Q |
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|||||||| | | ||| |||||| ||| |||||||||||||||||||| | | ||||||||| || || ||||| |||||||| ||||||||||| | | |
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| T |
6792803 |
aggctcaataggattaacaagaaactcatgtggcaaatccttaatacccttaagataaaatgtgtaaaatatcttaaatggaaacacaatttgatgaagc |
6792704 |
T |
|
| Q |
168 |
ttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagt |
267 |
Q |
| |
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|| |||||||| | |||||||||||||||||||| |||||||||||||| | |||||| ||||| ||| |||||||| | ||||| || | | | |
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| T |
6792703 |
ttaacttgaccataaacaccttcaaatattccagttccaccagtcacagccaaataagtatcctcctcataagttaaataagaaccttgcacagaaatat |
6792604 |
T |
|
| Q |
268 |
gaccataatctccaaaatggaaactgtagattgcttcat |
306 |
Q |
| |
|
||||||| |||||||||| ||||| || |||||||||| |
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| T |
6792603 |
gaccatactctccaaaataaaaactatatattgcttcat |
6792565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 211
Target Start/End: Complemental strand, 6800246 - 6800131
Alignment:
| Q |
96 |
tgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaata |
195 |
Q |
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|||||||||||||||||||| | | ||||||||| || || | ||| |||||||| ||||||||||| | ||| |||||||| | |||||||||||||| |
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| T |
6800246 |
tgtggcaaatccttaatacccataagataaaatgtgtaaaatagcttaaatggaaacacaatttgatgaagcttaacttgaccataaacaccttcaaata |
6800147 |
T |
|
| Q |
196 |
ttccagaaccaccagt |
211 |
Q |
| |
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|||||| |||||||| |
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| T |
6800146 |
ttccagttccaccagt |
6800131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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