View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15014_low_8 (Length: 238)
Name: NF15014_low_8
Description: NF15014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15014_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 7258056 - 7257902
Alignment:
| Q |
1 |
ctttggaaggccaaagcatcagaacaacttggagtagtaagttgatttcattgttgattcattcatcctctttttttacacacacacnnnnnnnnnnnnn |
100 |
Q |
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| T |
7258056 |
ctttggaaggccaaagcatcagaacaacttggagtagtaagttgatttcatt-----------catcctctttttttacacacacaaaaaaaaaaaaaaa |
7257968 |
T |
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| Q |
101 |
n-----ctgtcatctattaattgtggttcatgttgtactaagattgaaattctattataactgtga |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7257967 |
aaaaaactgtcatctattaattgtggttcatgttgtactaagattgaaattctattataactgtga |
7257902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 7257862 - 7257800
Alignment:
| Q |
167 |
ttaataatttctcttctgagaggcccttcaattcattccgagattcacctgtttatgatgatg |
229 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7257862 |
ttaataatttctcttctgagaggcccttcagttcattccgagattcacctgtttatgatgatg |
7257800 |
T |
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