View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15015_high_5 (Length: 267)
Name: NF15015_high_5
Description: NF15015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15015_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 4653228 - 4653002
Alignment:
| Q |
25 |
ttaagatcaccatagcgattgttgcgacgattatagtttccggcctcttgctagcaatgatcgtaggcaacacannnnnnnggctaaggaaaaagcttca |
124 |
Q |
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| T |
4653228 |
ttaagatcaccatagcgattgttgcgacgattgtagtttccagcctcttgctagcaatgatcgtaggcaacacatttttttggctaaggaaaaagcttca |
4653129 |
T |
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| Q |
125 |
tattgtcatgaaagatagctcatcaaagacaaagaacaaagggtcgtcatctttgccaccacatttgtgtcgctccttcacaatcgcagagatcaaagca |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4653128 |
tattgtcatgaaagatagctcatcaaagacaaagaacaaagggtcgtcatctttgccaccacatttgtgtcgctccttcacaatcgcagagatcaaagca |
4653029 |
T |
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| Q |
225 |
gccacaaataacttcgatgatgttttc |
251 |
Q |
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| T |
4653028 |
gccacaaataacttcgatgatgttttc |
4653002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 107 - 246
Target Start/End: Complemental strand, 4672266 - 4672127
Alignment:
| Q |
107 |
gctaaggaaaaagcttcatattgtcatgaaagatagctcatcaaagacaaagaacaaagggtcgtcatctttgccaccacatttgtgtcgctccttcaca |
206 |
Q |
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| T |
4672266 |
gctaaggaaaaggattaaaaatgccatgaaagatagctcatcgaagacaaagaacaaagggtcaccacctttgccgccccacttgtgccgttcctttaca |
4672167 |
T |
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| Q |
207 |
atcgcagagatcaaagcagccacaaataacttcgatgatg |
246 |
Q |
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| T |
4672166 |
atcgcagagatcaaagcagccacaaacaacttcgatgatg |
4672127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 4643263 - 4643191
Alignment:
| Q |
174 |
tctttgccaccacatttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataacttcgatgatg |
246 |
Q |
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| T |
4643263 |
tctttgccgccccatctgtgccgctcctttacaatcgcagagatcaaagcagctacaaacaacttcgatgatg |
4643191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 4666515 - 4666417
Alignment:
| Q |
153 |
acaaagaacaaagggtcgtcatctttgccaccacatttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataacttcgatgatgttttc |
251 |
Q |
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| T |
4666515 |
acaaagaacacagagttgtcatctttgccgccccatttgtgccggtcctttacaattgcagagatcagagcagccacaaacaactttgacgatgatttc |
4666417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 4636437 - 4636344
Alignment:
| Q |
153 |
acaaagaacaaagggtcgtcatctttgccaccacatttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataacttcgatgatg |
246 |
Q |
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|||||||| |||| |||||| |||| ||| | ||||||| |||| ||| |||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
4636437 |
acaaagaatgaaggttcgtcaactttaccatcctatttgtgccgctactttacaatcgcagagatcagagcagccacaaaaaacttcgatgatg |
4636344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 4661387 - 4661286
Alignment:
| Q |
150 |
aagacaaagaacaaagggtcgtcatctttgccaccacatttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataacttcgatgatgttt |
249 |
Q |
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||||||||||||| ||| ||||||||||| || |||||||| |||| ||| ||||| |||||||||| |||||||||||| ||||| ||||||| || |
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| T |
4661387 |
aagacaaagaacactaggttatcatctttgccgccccatttgtgccgctactttacaattgcagagatcagagcagccacaaaaaactttgatgatgatt |
4661288 |
T |
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| Q |
250 |
tc |
251 |
Q |
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|| |
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| T |
4661287 |
tc |
4661286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 4630456 - 4630404
Alignment:
| Q |
186 |
catttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataactt |
238 |
Q |
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||||||||||||| ||| |||||||| |||||||||||||||||||| ||||| |
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| T |
4630456 |
catttgtgtcgctactttacaatcgcggagatcaaagcagccacaaacaactt |
4630404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 18926285 - 18926368
Alignment:
| Q |
163 |
aagggtcgtcatctttgccaccacatttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataacttcgatgatg |
246 |
Q |
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| T |
18926285 |
aagggttgccatctttaccgccccatttgtgccgctactttacaattgcagagataaaagcagccacaaataactttgatgatg |
18926368 |
T |
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