View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15015_low_1 (Length: 551)

Name: NF15015_low_1
Description: NF15015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15015_low_1
NF15015_low_1
[»] chr6 (5 HSPs)
chr6 (341-536)||(21842269-21842464)
chr6 (206-276)||(21842134-21842204)
chr6 (211-252)||(23009946-23009987)
chr6 (211-252)||(23778377-23778418)
chr6 (208-275)||(9869274-9869336)
[»] scaffold0056 (2 HSPs)
scaffold0056 (341-509)||(24301-24460)
scaffold0056 (206-275)||(24525-24590)
[»] chr8 (3 HSPs)
chr8 (341-525)||(24720139-24720317)
chr8 (206-252)||(24720034-24720080)
chr8 (213-252)||(24537785-24537823)
[»] chr5 (4 HSPs)
chr5 (341-426)||(24187660-24187744)
chr5 (206-275)||(24187531-24187595)
chr5 (206-252)||(16782027-16782072)
chr5 (209-274)||(15373827-15373887)
[»] scaffold0008 (2 HSPs)
scaffold0008 (341-431)||(233716-233805)
scaffold0008 (209-275)||(233874-233936)
[»] chr3 (1 HSPs)
chr3 (206-249)||(16230409-16230452)
[»] chr7 (4 HSPs)
chr7 (206-252)||(5108097-5108142)
chr7 (208-244)||(1587373-1587409)
chr7 (341-415)||(16063219-16063297)
chr7 (208-252)||(16063086-16063131)


Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-101; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 341 - 536
Target Start/End: Original strand, 21842269 - 21842464
Alignment:
Q  341 aatagagtcttaggttttaattagtagtgccattaggtattaactttaatagttaatttagatcgtgtctgcatttagaaaacaatcgagttagttgagt 440  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21842269 aatagagtcttaagttttaattagtagtgccattaggtattaactttaatagttaatttagatcgtgtctgcatttagaaaacaatcgagtcagttgagt 21842368  T
Q  441 ctaagtgaataaaagttaaaaactaaaatcaattataattataaatcaattttacatcgtaagaagtaggtctaaatcaaactctccaattgaaaa 536  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21842369 ctaagtgaataaaagttaaaaactaaaatcaattataattataaatcaattttacatcgtaagaagtaggtctaaatcaaactctccaattgaaaa 21842464  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 206 - 276
Target Start/End: Original strand, 21842134 - 21842204
Alignment:
Q  206 gggagtcgtagtaaaaataacaagttgttataatatctacattagatagatagagtctagtttaattaggg 276  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21842134 gggagtcgtggtaaaaataacaagttgttataatatctacattagatagatagagtctagtttaattaggg 21842204  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 23009946 - 23009987
Alignment:
Q  211 tcgtagtaaaaataacaagttgttataatatctacattagat 252  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  23009946 tcgtagtaaaaataacaagttgttataatatctacaatagat 23009987  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 23778418 - 23778377
Alignment:
Q  211 tcgtagtaaaaataacaagttgttataatatctacattagat 252  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  23778418 tcgtagtaaaaataacaagttgttataatatctacaatagat 23778377  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 9869274 - 9869336
Alignment:
Q  208 gagtcgtagtaaaaataacaagttgttataatatctacattagatagatagagtctagtttaattagg 275  Q
    |||||||||||||||||||  ||||||||||||| |||||    ||||| ||||||||||||||||||    
T  9869274 gagtcgtagtaaaaataacg-gttgttataatatttacat----tagatcgagtctagtttaattagg 9869336  T

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Target: scaffold0056 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 341 - 509
Target Start/End: Complemental strand, 24460 - 24301
Alignment:
Q  341 aatagagtcttaggttttaattagtagtgccattaggtattaactttaatagttaatttagatcgtgtctgcatttagaaaacaatcgagttagttgagt 440  Q
    ||||||||||||||||  |||| |||||   |||||||||||||||||| ||||||||||||||| || ||||||      ||| | |||| ||||||||    
T  24460 aatagagtcttaggtt--aattggtagtataattaggtattaactttaaaagttaatttagatcgagtatgcatt------acatt-gagtcagttgagt 24370  T
Q  441 ctaagtgaataaaagttaaaaactaaaatcaattataattataaatcaattttacatcgtaagaagtag 509  Q
    ||||||||| ||| |||  ||||||| |||||||||||| ||||||||| |||| ||||||||||||||    
T  24369 ctaagtgaacaaacgtttcaaactaagatcaattataataataaatcaactttagatcgtaagaagtag 24301  T

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Target: scaffold0056; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 24590 - 24525
Alignment:
Q  206 gggagtcgtagtaaaaataacaagttgttataatatctacattagatagatagagtctagtttaattagg 275  Q
    ||||||| |||||||||||||||||| ||||||||||||||||    |||| ||||||||||||||||||    
T  24590 gggagtcatagtaaaaataacaagtttttataatatctacatt----agatcgagtctagtttaattagg 24525  T

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Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 341 - 525
Target Start/End: Original strand, 24720139 - 24720317
Alignment:
Q  341 aatagagtcttaggttttaattagtagtgccattaggtattaact-ttaatagttaatttagatcgtgtctgcatttagaaaacaatcgagttagttgag 439  Q
    ||||||||||||||||| | ||||||||||||||| |||||||||  ||||||||||||||||||  |||||||||      || || |||| |||||||    
T  24720139 aatagagtcttaggttt-agttagtagtgccattaagtattaactaataatagttaatttagatcaggtctgcatt------ac-atagagtcagttgag 24720230  T
Q  440 tctaagtgaataaaagttaaaaac-taaaatcaattataattataaatcaattttacatcgtaagaagtaggtctaaatcaaactct 525  Q
    |||||||||||||| |||| |||| ||| | ||||||||||||| |||||| |||| ||| ||||| ||||||| || |||| ||||    
T  24720231 tctaagtgaataaacgttacaaacttaagaacaattataattattaatcaactttaaatcataagaggtaggtccaagtcaacctct 24720317  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 24720034 - 24720080
Alignment:
Q  206 gggagtcgtagtaaaaataacaagttgttataatatctacattagat 252  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  24720034 gggagtcgtagtaaaaataacaagttgttataacatctacattagat 24720080  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 24537823 - 24537785
Alignment:
Q  213 gtagtaaaaataacaagttgttataatatctacattagat 252  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  24537823 gtagtaaaaataa-aagttgttataatatctacattagat 24537785  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 426
Target Start/End: Original strand, 24187660 - 24187744
Alignment:
Q  341 aatagagtcttaggttttaattagtagtgccattaggtattaactttaatagttaatttagatcgtgtctgcatttagaaaacaat 426  Q
    ||||||||||||||||| ||||||||||   |||||||||| |||||||||||||||||||| || |||||||||||| |||||||    
T  24187660 aatagagtcttaggttt-aattagtagtataattaggtatttactttaatagttaatttagaccgagtctgcatttaggaaacaat 24187744  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 24187531 - 24187595
Alignment:
Q  206 gggagtcgtagtaaaaataacaagttgttataatatctacattagatagatagagtctagtttaattagg 275  Q
    |||||||||||||||||||||  |||||||||||||||||||    ||||| ||||||||||||||||||    
T  24187531 gggagtcgtagtaaaaataacg-gttgttataatatctacat----tagatcgagtctagtttaattagg 24187595  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 16782027 - 16782072
Alignment:
Q  206 gggagtcgtagtaaaaataacaagttgttataatatctacattagat 252  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||    
T  16782027 gggagtcgtagtaaaaataacaa-ttgttataatatttacattagat 16782072  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 209 - 274
Target Start/End: Original strand, 15373827 - 15373887
Alignment:
Q  209 agtcgtagtaaaaataacaagttgttataatatctacattagatagatagagtctagtttaattag 274  Q
    ||||||||||||| ||||  |||||||||||||||||||    ||||| |||||||||||||||||    
T  15373827 agtcgtagtaaaactaacg-gttgttataatatctacat----tagatcgagtctagtttaattag 15373887  T

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Target: scaffold0008 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 341 - 431
Target Start/End: Complemental strand, 233805 - 233716
Alignment:
Q  341 aatagagtcttaggttttaattagtagtgccattaggtattaactttaatagttaatttagatcgtgtctgcatttagaaaacaatcgagt 431  Q
    |||||| |||||||||| || |||||||| |||| | |||||||||||| ||||| ||||||| | || ||||||||||||||||||||||    
T  233805 aatagaatcttaggttt-aactagtagtgtcattggatattaactttaaaagttagtttagattgagtgtgcatttagaaaacaatcgagt 233716  T

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Target: scaffold0008; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 233936 - 233874
Alignment:
Q  209 agtcgtagtaaaaataacaagttgttataatatctacattagatagatagagtctagtttaattagg 275  Q
    |||||||||||||||||||| || ||||||||||||| |    ||||| ||||||||||||||||||    
T  233936 agtcgtagtaaaaataacaaatttttataatatctactt----tagatcgagtctagtttaattagg 233874  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 249
Target Start/End: Original strand, 16230409 - 16230452
Alignment:
Q  206 gggagtcgtagtaaaaataacaagttgttataatatctacatta 249  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  16230409 gggagtggtagtaaaaataacaagttgttataatatctacatta 16230452  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 5108142 - 5108097
Alignment:
Q  206 gggagtcgtagtaaaaataacaagttgttataatatctacattagat 252  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||    
T  5108142 gggagtcgtagtaaaaataacg-gttgttataatatctacattagat 5108097  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 1587409 - 1587373
Alignment:
Q  208 gagtcgtagtaaaaataacaagttgttataatatcta 244  Q
    ||||||||||||||||||||| |||||||||||||||    
T  1587409 gagtcgtagtaaaaataacaatttgttataatatcta 1587373  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 415
Target Start/End: Original strand, 16063219 - 16063297
Alignment:
Q  341 aatagagtcttaggttt---taattagtagtgccattaggtattaactt-taatagttaatttagatcgtgtctgcatt 415  Q
    |||||||||||||| ||   |||||| ||||| |||||||| ||||||  ||||||||||||||||||| |||||||||    
T  16063219 aatagagtcttaggattaattaattattagtgtcattaggttttaactagtaatagttaatttagatcgagtctgcatt 16063297  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 16063086 - 16063131
Alignment:
Q  208 gagtcgtagtaaaaataacaa-gttgttataatatctacattagat 252  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  16063086 gagtcgtagtaaaaacaacaaagttgttataatatttacattagat 16063131  T

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