View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15015_low_2 (Length: 503)
Name: NF15015_low_2
Description: NF15015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15015_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 95 - 493
Target Start/End: Complemental strand, 34101786 - 34101388
Alignment:
| Q |
95 |
cctctgctaagtaaaccttcgttatatttctgcaacatatcatcaatttcttccacatatgtttctttcggcggtggcaaaacagaattagccgtagaat |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34101786 |
cctctgctaagtaaaccttcgttatatttctgcaacatatcatcaatttcttccacatatgtttctttcggcggtggcaaaacagaattagccgtagaat |
34101687 |
T |
|
| Q |
195 |
tttcagcgaatcttccaacaccggagtttgtagtggaaatcaaatctccaccgtccgtttcatcagaacttccaacaacaacaacaggacatttgcaatg |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| |
|
|
| T |
34101686 |
tttcagcgaatcttccaacaccggagtttgcagtggaaatcaaatctccaccgtccgtttcatcagaacttcccacaacaccaacaggacattcgcaatg |
34101587 |
T |
|
| Q |
295 |
gcgaacgcaatactcgcccccttccaacgataagcgcgctgaggttgagagtgttgatctctaagcagagacgctccttgatttcatgatccatcacaat |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34101586 |
gcgaacgcaatactcgcccccttccaacgataagcgcgctgaggttgagactgttgatctctaagcagagacgctccttgatttcatgatccatcacaat |
34101487 |
T |
|
| Q |
395 |
atggagattgtgaggaatctgtgcttgaagtaacggtttcgcaaaatcgttaagtttggaaatcgtgtacacgtggaagtagtttttcatcttcttcat |
493 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34101486 |
gtggagattgtaaggaatctgtgcttgaagtaacgatttcgcaaaatcgtcaagtttggaaatcgtgtacacgtggaagtagtttttcatcttcttcat |
34101388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University