View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15015_low_4 (Length: 382)

Name: NF15015_low_4
Description: NF15015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15015_low_4
NF15015_low_4
[»] chr2 (9 HSPs)
chr2 (1-368)||(13291569-13291939)
chr2 (8-92)||(9189839-9189924)
chr2 (61-134)||(15444150-15444223)
chr2 (5-92)||(28603272-28603360)
chr2 (30-92)||(30650903-30650966)
chr2 (8-92)||(9180760-9180845)
chr2 (8-92)||(30658237-30658322)
chr2 (5-92)||(1935026-1935114)
chr2 (5-92)||(35601896-35601984)
[»] chr4 (13 HSPs)
chr4 (1-140)||(1151327-1151467)
chr4 (5-92)||(55251694-55251781)
chr4 (9-83)||(12878222-12878297)
chr4 (30-129)||(32545031-32545130)
chr4 (8-92)||(51697891-51697976)
chr4 (30-92)||(13059384-13059447)
chr4 (30-92)||(33463414-33463477)
chr4 (30-92)||(37264622-37264685)
chr4 (57-91)||(4550973-4551007)
chr4 (61-102)||(2819808-2819849)
chr4 (5-89)||(8693688-8693773)
chr4 (5-92)||(5271452-5271540)
chr4 (5-92)||(31273495-31273583)
[»] chr1 (6 HSPs)
chr1 (5-92)||(19799046-19799134)
chr1 (8-92)||(10140063-10140148)
chr1 (5-84)||(39588400-39588480)
chr1 (30-89)||(18784607-18784666)
chr1 (30-92)||(51041520-51041582)
chr1 (304-364)||(23469116-23469176)
[»] chr8 (6 HSPs)
chr8 (9-92)||(1911006-1911090)
chr8 (7-87)||(24673360-24673441)
chr8 (5-92)||(31449899-31449987)
chr8 (5-84)||(18876400-18876479)
chr8 (5-46)||(2355492-2355533)
chr8 (61-102)||(19166598-19166639)
[»] chr5 (8 HSPs)
chr5 (5-92)||(41587193-41587281)
chr5 (5-92)||(39523023-39523111)
chr5 (5-92)||(40147869-40147957)
chr5 (30-92)||(39518384-39518447)
chr5 (30-92)||(41996639-41996702)
chr5 (34-92)||(10759882-10759940)
chr5 (27-92)||(37652885-37652951)
chr5 (8-92)||(7451732-7451817)
[»] chr6 (3 HSPs)
chr6 (5-91)||(2700139-2700226)
chr6 (7-90)||(24589199-24589283)
chr6 (5-92)||(8747756-8747844)
[»] chr7 (4 HSPs)
chr7 (1-84)||(29150916-29151000)
chr7 (5-92)||(44510710-44510798)
chr7 (30-112)||(4579462-4579545)
chr7 (30-92)||(44423195-44423258)
[»] chr3 (6 HSPs)
chr3 (5-92)||(3657273-3657361)
chr3 (5-91)||(28125090-28125176)
chr3 (8-92)||(758404-758489)
chr3 (26-92)||(29715616-29715683)
chr3 (5-93)||(8069651-8069739)
chr3 (5-92)||(7571251-7571339)
[»] scaffold0184 (1 HSPs)
scaffold0184 (54-129)||(2246-2321)
[»] scaffold0045 (1 HSPs)
scaffold0045 (26-89)||(83043-83107)


Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 13291569 - 13291939
Alignment:
Q  1 agtttgtcttgcacaattatgaattgtgtcacgaaacgtcttaaaagaggaatctgatcatgacttaacctagtaacaacttcgatagataaaaataatt 100  Q
    ||||| |||||||||| ||||||||||| || ||||| ||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  13291569 agtttatcttgcacaactatgaattgtgccatgaaacatcttaaaagagcaatctgatcatggcttaacctggtaacaacttcgatagataaaaataatt 13291668  T
Q  101 ttccaatatagactttagaaattcaaatacaacaatttaattaaaaattcnnnnnnnncaattttaagatggaacaattgcaattccaacaatcatacnn 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||      
T  13291669 tttcaatatagactttagaaattcaaatacaacaatttaattaaaaattcaaaaacaacaattttaagatggaacaattgcaattccaacaatcatactt 13291768  T
Q  201 nnnnn---atatcttgcacattcttgcataaggtctggtgtcttgtgtttacgtaaattggagttatcatattattgcaaaactaaattaaagaacattt 297  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13291769 ttttttttatatcttgcacattcttgcataaggtctggtgtcttgtgtttacgtaaattggagttatcatattattgcaaaactaaattaaagaacattt 13291868  T
Q  298 cagtcaatttgcctccttgattaagtgcaagttatcaatgaggggtgactttataatctggcttgcaattg 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13291869 cagtcaatttgcctccttgattaagtgcaagttatcaatgaggggtgactttataatctggcttgcaattg 13291939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 9189839 - 9189924
Alignment:
Q  8 cttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    ||||||||||| || |  ||| |||||||||||||||| |||| || ||| || ||||| |||||||||||||||||| |||||||    
T  9189839 cttgcacaattttggacagtgccacgaaacgtcttaaagagagcaacctggtcgtgactcaacctagtaacaacttcggtagataa 9189924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 15444150 - 15444223
Alignment:
Q  61 tgacttaacctagtaacaacttcgatagataaaaataattttccaatatagactttagaaattcaaatacaaca 134  Q
    ||||| |||| || || |||||||||| || ||||| ||||| |||||||||||||| ||||||||||| ||||    
T  15444150 tgactcaacccagaaataacttcgataaatgaaaattatttttcaatatagactttaaaaattcaaatataaca 15444223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 28603360 - 28603272
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||| || |  |||||||||||||| ||||| ||||  | ||| || ||||| |||||||||||||||||| |||||||    
T  28603360 tgtcttgcacaattttggacagtgtcacgaaacgttttaaagagagcgacctggtcgtgactcaacctagtaacaacttcggtagataa 28603272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 30650966 - 30650903
Alignment:
Q  30 cacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||||| ||||  ||||| || ||||| |||||||||||||||||| |||||||    
T  30650966 cacgaaacgtcttaaagagagcgatctggtcgtgactcaacctagtaacaacttcggtagataa 30650903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 9180760 - 9180845
Alignment:
Q  8 cttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    ||||||||||| || |  ||| |||||||||||||||| ||||  | ||| || ||||| |||||||||||||||||| |||||||    
T  9180760 cttgcacaattttggacagtgccacgaaacgtcttaaagagagcgacctggtcgtgactcaacctagtaacaacttcggtagataa 9180845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 30658322 - 30658237
Alignment:
Q  8 cttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    ||||||||||| ||| | ||| |||||||||||||||| ||||  | ||| || ||||| ||| |||||||||||||| |||||||    
T  30658322 cttgcacaattttgagtagtgccacgaaacgtcttaaagagagcgacctggtcgtgactcaacatagtaacaacttcggtagataa 30658237  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 1935026 - 1935114
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||| ||    ||| |||||||||||||||| ||||  | ||| || ||||| |||||||||||||||||| |||||||    
T  1935026 tgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggtcgtgactcaacctagtaacaacttcggtagataa 1935114  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 35601984 - 35601896
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaaa-gaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||| || |  ||| ||||||||||||||||| |||  | ||| || ||| | |||||||||||||||||| |||||||    
T  35601984 tgtcttgcacaattttggacagtgccacgaaacgtcttaaaaagagcgacctggtcgtgattcaacctagtaacaacttcggtagataa 35601896  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 1151327 - 1151467
Alignment:
Q  1 agtttgtcttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataaaaataat 99  Q
    |||| ||||||||||||| || || |||||| ||||||||||||| ||||  ||||||||  |||| ||||||||||||||||||||| ||||||||       
T  1151327 agttagtcttgcacaattttggatagtgtcatgaaacgtcttaaagagagtgatctgatcgcgactcaacctagtaacaacttcgataaataaaaattca 1151426  T
Q  100 tttccaatatagactttagaaattcaaatacaacaatttaa 140  Q
    ||| ||| |||||||||  ||||| ||||||||||||||||    
T  1151427 ttttcaaaatagactttgaaaatttaaatacaacaatttaa 1151467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 55251781 - 55251694
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaaagaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||| || |  ||| ||||||||||||||||||||  | ||| || ||||| ||||||||||||||||| ||||||||    
T  55251781 tgtcttgcacaattttggacagtgccacgaaacgtcttaaaagagcgacctggtcgtgactcaacctagtaacaacttcaatagataa 55251694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 12878297 - 12878222
Alignment:
Q  9 ttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttc 83  Q
    |||||||||| ||||  |||||||||||||||||||| ||||  | |||||| ||||| |||||||||||||||||    
T  12878297 ttgcacaattttgaaaagtgtcacgaaacgtcttaaagagagcgacctgatcgtgactcaacctagtaacaacttc 12878222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 32545130 - 32545031
Alignment:
Q  30 cacgaaacgtcttaaaagaggaatctgatcatgacttaacctagtaacaacttcgatagataaaaataattttccaatatagactttagaaattcaaata 129  Q
    |||||||| ||||||||||   | |||||| ||||| |||||||||||||||||  |||||||||||   ||| ||| | |||||||||||||| |||||    
T  32545130 cacgaaacatcttaaaagattgacctgatcgtgactcaacctagtaacaacttcagtagataaaaattcattttcaaaacagactttagaaattgaaata 32545031  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 51697976 - 51697891
Alignment:
Q  8 cttgcacaattatgaattgtgtcacgaaacgtcttaaaa-gaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    ||||||||||| |||   |||||| |||||||||||||| |||  ||||| || ||||| |||||||||||||||||| |||||||    
T  51697976 cttgcacaattttgagcagtgtcatgaaacgtcttaaaaagagcgatctggtcgtgactcaacctagtaacaacttcggtagataa 51697891  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 13059447 - 13059384
Alignment:
Q  30 cacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||||| ||||  ||||| |||||||| |||||||||| ||||||| |||||||    
T  13059447 cacgaaacgtcttaaagagagcgatctggtcatgactcaacctagtaataacttcggtagataa 13059384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 33463414 - 33463477
Alignment:
Q  30 cacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||||| ||||  | ||| || ||||| ||||||||||||||||||||||||||    
T  33463414 cacgaaacgtcttaaagagagcgacctggtcgtgactcaacctagtaacaacttcgatagataa 33463477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 37264622 - 37264685
Alignment:
Q  30 cacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||||| ||||  | ||| || ||||| ||||||||||||||||||||||||||    
T  37264622 cacgaaacgtcttaaagagagcgacctggtcgtgactcaacctagtaacaacttcgatagataa 37264685  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 4551007 - 4550973
Alignment:
Q  57 atcatgacttaacctagtaacaacttcgatagata 91  Q
    ||||||||| |||||||||||||||||||||||||    
T  4551007 atcatgactcaacctagtaacaacttcgatagata 4550973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 2819849 - 2819808
Alignment:
Q  61 tgacttaacctagtaacaacttcgatagataaaaataatttt 102  Q
    ||||| || ||||||||||||||||||||||||||| |||||    
T  2819849 tgactcaatctagtaacaacttcgatagataaaaattatttt 2819808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 8693773 - 8693688
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgataga 89  Q
    |||||||||||||| ||  | | | |||||||||||||||| ||||  | ||| || ||||| |||||||||||||||||||||||    
T  8693773 tgtcttgcacaattttgggtagcgccacgaaacgtcttaaagagagcgacctggtcgtgactcaacctagtaacaacttcgataga 8693688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 5271452 - 5271540
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||| ||    ||| |||||||||||||||| ||||  | ||| || ||||| |||||||||||||||||| |||||||    
T  5271452 tgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggtcgtgactcaacctagtaacaacttcggtagataa 5271540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 31273583 - 31273495
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||| ||    ||| |||||||||||||||| ||||  | ||| || ||||| |||||||||||||||||| |||||||    
T  31273583 tgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggtcgtgactcaacctagtaacaacttcggtagataa 31273495  T

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Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 19799046 - 19799134
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||| || || ||| |||||||||||||||| ||||  |||||||| ||||| ||||||||||||||||||||||||||    
T  19799046 tgtcttgcacaattttggatagtgccacgaaacgtcttaaagagagcgatctgatcgtgactcaacctagtaacaacttcgatagataa 19799134  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 10140148 - 10140063
Alignment:
Q  8 cttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    ||||||||||| ||| | ||| |||||||||| ||||| ||||  | |||||| ||||| |||||||||||||||||| |||||||    
T  10140148 cttgcacaattttgagtagtgccacgaaacgtgttaaagagagcgacctgatcgtgactcaacctagtaacaacttcggtagataa 10140063  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 39588400 - 39588480
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcg 84  Q
    |||||||||||||| || |  ||| |||||||||||||||| ||||  | |||||| ||||||||||||||||||| ||||    
T  39588400 tgtcttgcacaattttggacagtgccacgaaacgtcttaaagagagcgacctgatcgtgacttaacctagtaacaatttcg 39588480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 18784607 - 18784666
Alignment:
Q  30 cacgaaacgtcttaaaagaggaatctgatcatgacttaacctagtaacaacttcgataga 89  Q
    ||||||| ||||||||||||  | |||||| ||||| |||||||||||||||||| ||||    
T  18784607 cacgaaatgtcttaaaagagcgacctgatcgtgactcaacctagtaacaacttcgctaga 18784666  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 51041520 - 51041582
Alignment:
Q  30 cacgaaacgtcttaaaagaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    ||||||||||||||||||||  | ||| || ||||| ||| |||||||||||||| |||||||    
T  51041520 cacgaaacgtcttaaaagagcgacctggtcgtgactcaacttagtaacaacttcggtagataa 51041582  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 364
Target Start/End: Original strand, 23469116 - 23469176
Alignment:
Q  304 atttgcctccttgattaagtgcaagttatcaatgaggggtgactttataatctggcttgca 364  Q
    ||||| || |||||||||||| || ||||||| ||| | ||||||||| ||||||||||||    
T  23469116 atttggctgcttgattaagtgtaaattatcaaagagagttgactttatgatctggcttgca 23469176  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 1911006 - 1911090
Alignment:
Q  9 ttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||| ||| | ||| |||||||||||||||| ||||  | |||||| |||||||||||| |||||||||||||||||||    
T  1911006 ttgcacaattttgactagtgccacgaaacgtcttaaagagagcgacctgatcgtgacttaacctaataacaacttcgatagataa 1911090  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 24673360 - 24673441
Alignment:
Q  7 tcttgcacaattatgaattgtgtcacgaaacgtcttaaaa-gaggaatctgatcatgacttaacctagtaacaacttcgata 87  Q
    ||||||| |||| ||||  |||||||||||||| |||||| |||  |||||||| | ||| |||||||||||||||||||||    
T  24673360 tcttgcataattttgaacagtgtcacgaaacgttttaaaaagagcgatctgatcgtaactcaacctagtaacaacttcgata 24673441  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 31449899 - 31449987
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||| ||    ||| |||||||||||||||| ||||  | ||| || ||||| ||||||||||||||||||||||||||    
T  31449899 tgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggtcgtgactcaacctagtaacaacttcgatagataa 31449987  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 18876400 - 18876479
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaaagaggaatctgatcatgacttaacctagtaacaacttcg 84  Q
    |||||||||||||| ||    ||| ||||||||||||||||||||  | ||| || ||||| ||||||||||||||||||    
T  18876400 tgtcttgcacaattttgggcagtgccacgaaacgtcttaaaagagcgacctggtcgtgactcaacctagtaacaacttcg 18876479  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 2355492 - 2355533
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaaa 46  Q
    |||||||||||||| ||||  |||||||||||||||||||||    
T  2355492 tgtcttgcacaattttgaaaagtgtcacgaaacgtcttaaaa 2355533  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 19166639 - 19166598
Alignment:
Q  61 tgacttaacctagtaacaacttcgatagataaaaataatttt 102  Q
    ||||| |||||||||||||||||| ||||||||||| |||||    
T  19166639 tgactcaacctagtaacaacttcggtagataaaaattatttt 19166598  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 41587193 - 41587281
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||| ||||  |||||||||||||||||||| |||| || ||| || ||||| || ||||||||||||||| |||||||    
T  41587193 tgtcttgcacaattttgaacagtgtcacgaaacgtcttaaagagagcaacctggtcgtgactcaaactagtaacaacttcggtagataa 41587281  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 39523111 - 39523023
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||| ||    ||| |||||||||||||||| ||||  | ||| || ||||| ||||||||||||||||||||||||||    
T  39523111 tgtcttgcacaattttgggcggtgccacgaaacgtcttaaagagagcgacctggtcgtgactcaacctagtaacaacttcgatagataa 39523023  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 40147957 - 40147869
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||| ||    ||| |||||||| ||||||| ||||  | |||||||||||| |||||| |||||||||||||||||||    
T  40147957 tgtcttgcacaattttgggcagtgccacgaaacatcttaaagagagcgacctgatcatgactcaacctaataacaacttcgatagataa 40147869  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 39518447 - 39518384
Alignment:
Q  30 cacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||||| ||||  | ||| || ||||| ||||||||||||||||||||||||||    
T  39518447 cacgaaacgtcttaaagagagcgacctggtcgtgactcaacctagtaacaacttcgatagataa 39518384  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 41996702 - 41996639
Alignment:
Q  30 cacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||||| |||| || ||| || ||||| |||||||||||||||||| |||||||    
T  41996702 cacgaaacgtcttaaagagagcaacctggtcgtgactcaacctagtaacaacttcggtagataa 41996639  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 10759882 - 10759940
Alignment:
Q  34 aaacgtcttaaaagaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    ||||||||||||||||  | ||| || ||||| |||||||||||||||||| |||||||    
T  10759882 aaacgtcttaaaagagcgacctggtcgtgactcaacctagtaacaacttcggtagataa 10759940  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 37652885 - 37652951
Alignment:
Q  27 tgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    ||||||||||||||||||| ||||  | |||||| ||||| |||||| ||||||||||| |||||||    
T  37652885 tgtcacgaaacgtcttaaagagagcgacctgatcgtgactcaacctaataacaacttcggtagataa 37652951  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 7451817 - 7451732
Alignment:
Q  8 cttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    ||||||||||| || |  ||| |||||||||||||||| ||||  | ||| || ||||| |||||||||||||||||| |||||||    
T  7451817 cttgcacaattttggacagtgccacgaaacgtcttaaagagagcgacctggtcgtgactcaacctagtaacaacttcggtagataa 7451732  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 2700139 - 2700226
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagata 91  Q
    |||||||||||||| ||||  ||| |||||||||||||||| ||||  ||||| || ||||| |||||||||||||||||| ||||||    
T  2700139 tgtcttgcacaattttgaacagtgccacgaaacgtcttaaagagagcgatctggtcgtgactcaacctagtaacaacttcggtagata 2700226  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 24589199 - 24589283
Alignment:
Q  7 tcttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagat 90  Q
    |||||||||||| || |  |||||||||||||| ||||| ||||  |||||||| ||||| ||| ||||||||||||||||||||    
T  24589199 tcttgcacaattttggaaagtgtcacgaaacgttttaaagagagcgatctgatcgtgactcaacttagtaacaacttcgatagat 24589283  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 8747844 - 8747756
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||| ||    |||||||| ||||||||||| ||||  | ||| || ||||| ||||||||||||||||| ||||||||    
T  8747844 tgtcttgcacaattttgggcagtgtcacggaacgtcttaaagagagcgacctggtcgtgactcaacctagtaacaacttcaatagataa 8747756  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 29151000 - 29150916
Alignment:
Q  1 agtttgtcttgcacaattatgaattgtgtcacgaaacgtctt-aaaagaggaatctgatcatgacttaacctagtaacaacttcg 84  Q
    |||||| ||||||||||| |||   ||||||||||||||||| |||||||  ||||| || ||||| ||||||||||||||||||    
T  29151000 agtttgccttgcacaattttgagcagtgtcacgaaacgtcttaaaaagagcgatctggtcgtgactcaacctagtaacaacttcg 29150916  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 44510710 - 44510798
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||| || |  ||| ||| |||||||||||| |||| |||||| || ||||| |||||||||||||||||| |||||||    
T  44510710 tgtcttgcacaattttggacagtgccacaaaacgtcttaaagagagcaatctggtcgtgactcaacctagtaacaacttcggtagataa 44510798  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 4579545 - 4579462
Alignment:
Q  30 cacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataaaaataattttccaatataga 112  Q
    |||||||||||||||| ||||  | ||| || ||||| |||||||||||||||||||||||| ||||| ||||| ||| |||||    
T  4579545 cacgaaacgtcttaaagagagcgacctggtcgtgactcaacctagtaacaacttcgatagatgaaaattatttttcaaaataga 4579462  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 44423195 - 44423258
Alignment:
Q  30 cacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||||| ||||  |||||||| ||||| |||||||||||||||| | |||||||    
T  44423195 cacgaaacgtcttaaagagagcgatctgatcgtgactcaacctagtaacaactttggtagataa 44423258  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 3657273 - 3657361
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||| ||||  ||| |||||||||||||||| ||||  |||| ||| ||||| ||| |||||||||||||| |||||||    
T  3657273 tgtcttgcacaattttgaacagtgccacgaaacgtcttaaagagagcgatctaatcgtgactcaacatagtaacaacttcggtagataa 3657361  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 28125176 - 28125090
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaaagaggaatctgatcatgacttaacctagtaacaacttcgatagata 91  Q
    |||||||||||||| | |   ||| ||||||| |||||||||||| || ||| || ||||| ||||||||||||| |||||||||||    
T  28125176 tgtcttgcacaattttaagcagtgccacgaaatgtcttaaaagagcaacctggtcgtgactcaacctagtaacaatttcgatagata 28125090  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 758404 - 758489
Alignment:
Q  8 cttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    ||||||||||| ||  | ||| |||||||||||||||| ||||  ||||| || ||||| |||||||||||||||||| |||||||    
T  758404 cttgcacaattttgggtagtgccacgaaacgtcttaaagagagcgatctggtcgtgactcaacctagtaacaacttcggtagataa 758489  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 29715683 - 29715616
Alignment:
Q  26 gtgtcacgaaacgtcttaaaa-gaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    ||||||||||||||||||||| |||  ||||| || ||||| |||||| ||||||||||| |||||||    
T  29715683 gtgtcacgaaacgtcttaaaaagagcgatctggtcgtgactcaacctaataacaacttcggtagataa 29715616  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 8069739 - 8069651
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataaa 93  Q
    |||||||||||||| || |  ||| |||||||||||||||| ||||  | ||| || ||||| |||||||||||||||||| ||||||||    
T  8069739 tgtcttgcacaatt-tggacagtgccacgaaacgtcttaaagagagcgacctggtcgtgactcaacctagtaacaacttcggtagataaa 8069651  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 7571251 - 7571339
Alignment:
Q  5 tgtcttgcacaattatgaattgtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgatagataa 92  Q
    |||||||||||||| ||    ||| |||||||||||||||| ||||  | ||| || ||||| |||||||||||||||||| |||||||    
T  7571251 tgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggtcgtgactcaacctagtaacaacttcggtagataa 7571339  T

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Target: scaffold0184 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 2321 - 2246
Alignment:
Q  54 ctgatcatgacttaacctagtaacaacttcgatagataaaaataattttccaatatagactttagaaattcaaata 129  Q
    |||||||||||| |||||| |||||||||||||| || |||||  |||| ||| ||| | |||| |||||||||||    
T  2321 ctgatcatgactcaacctaataacaacttcgataaatgaaaattcttttacaaaatataatttaaaaattcaaata 2246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 83107 - 83043
Alignment:
Q  26 gtgtcacgaaacgtcttaaa-agaggaatctgatcatgacttaacctagtaacaacttcgataga 89  Q
    |||||||||||||||||||| ||||  | ||| || ||||| |||||||||||||||||| ||||    
T  83107 gtgtcacgaaacgtcttaaagagagcgacctggtcgtgactcaacctagtaacaacttcggtaga 83043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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