View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15016_high_4 (Length: 483)
Name: NF15016_high_4
Description: NF15016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15016_high_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 19 - 483
Target Start/End: Original strand, 30757057 - 30757521
Alignment:
| Q |
19 |
ttgagcggggttggatatgcttcgcgattatttttcttctttcgacttttagaaacaacaaaaataaaagaagtttcatcaccttctgcttcagtttaat |
118 |
Q |
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| T |
30757057 |
ttgagcggggttggatatgcttcgcgattatttttcttctttcgacttttagaaacaacaaaaataaaagaagtttcatcaccttctgcttcagtttaat |
30757156 |
T |
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| Q |
119 |
gagaaaccagctctaaaacatatgtgtggcgctcattatggctaaccaatgttcctcaattgtatatgtgacatcggacaaagcaaaatgaaaagaagtg |
218 |
Q |
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| T |
30757157 |
gagaaaccagctctaaaacatatgtgtggcgctcattatggctaaccaatgttcctcaattgtatatgtgacaccggacaaagcaaaatgaaaataagtg |
30757256 |
T |
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| Q |
219 |
tttgatttagggttccacgcaatctgagccagtgtagtggacacttttgccgagtttttctgctataacagtataagcaacttgttcggcatttttaact |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30757257 |
tttgatttagggttccacgcaatctgagccagtgtagtggacacttgtgccgagtttttatgctataacagtataagcaacttgttcggcatttttaact |
30757356 |
T |
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| Q |
319 |
tgagaatcattattaaaaaccttatctgcattaagaagtgtgggggttagaagtaacagggggttcagcatgacttgttggatgatcattagcaacaatg |
418 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| |
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| T |
30757357 |
tgagaatcattattaacaaccttatctgcattaagaagtgtgggggttagaagtaacagggggttcaacatgacttgttggatgatcattagtaacgatg |
30757456 |
T |
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| Q |
419 |
agctcttcggtattaatcagctcaccatgaagcttttcctgaatatttgaagtgtcatcagtacc |
483 |
Q |
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| T |
30757457 |
agctcttcggtattaatcagctcaccatgaagcttttcctgaatatttgaagtgtcatcagtacc |
30757521 |
T |
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