View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15016_high_6 (Length: 415)
Name: NF15016_high_6
Description: NF15016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15016_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 45 - 405
Target Start/End: Original strand, 32365140 - 32365500
Alignment:
| Q |
45 |
ctccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtgcttgtctaacattgtcatcatcaattctaacagaagcca |
144 |
Q |
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| T |
32365140 |
ctccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtgtttgtctaacattgtcatcatcaattctaacagaagcca |
32365239 |
T |
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| Q |
145 |
atacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaaaccaagtctctccatgttccaaccaaacac |
244 |
Q |
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| T |
32365240 |
atacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaatccaagtctctccatgttccatccaaacgc |
32365339 |
T |
|
| Q |
245 |
acaaaaactgcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataatacctcct |
344 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365340 |
acaaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataatacctcct |
32365439 |
T |
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| Q |
345 |
tgttgatctttagatgcaaatgcatattttttctcgaatggtttctctctaacttgaacct |
405 |
Q |
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| T |
32365440 |
tgttgatctttagatgcaaatgcatattttttctcgaatggtttctctctaacttgaacct |
32365500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 45 - 405
Target Start/End: Original strand, 32376825 - 32377185
Alignment:
| Q |
45 |
ctccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtgcttgtctaacattgtcatcatcaattctaacagaagcca |
144 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32376825 |
ctccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtgcttgtctaacattgtcatcatcaattctaacagaagcca |
32376924 |
T |
|
| Q |
145 |
atacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaaaccaagtctctccatgttccaaccaaacac |
244 |
Q |
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| T |
32376925 |
atacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaatccaagtctctccatgttccatccaaacgc |
32377024 |
T |
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| Q |
245 |
acaaaaactgcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataatacctcct |
344 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32377025 |
acaaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataattcctcct |
32377124 |
T |
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| Q |
345 |
tgttgatctttagatgcaaatgcatattttttctcgaatggtttctctctaacttgaacct |
405 |
Q |
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||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||| |
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| T |
32377125 |
tgttgatctttagatacaaatgcgtattttttctcgaagggtttgtctctaacttgaacct |
32377185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 111 - 331
Target Start/End: Original strand, 36121824 - 36122044
Alignment:
| Q |
111 |
ctaacattgtcatcatcaattctaacagaagccaatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcc |
210 |
Q |
| |
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|||||| ||||||| ||||| |||||| |||||| | || ||||||||||| |||||||| || |||||||| || || || |||||||||||||| | |
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| T |
36121824 |
ctaacagtgtcatcctcaatattaacagcagccaagatgaaaatccaaaagggggccatacagaaaagcataaaagtggcaatgtgaacatacatgtttc |
36121923 |
T |
|
| Q |
211 |
caaaaccaagtctctccatgttccaaccaaacacacaaaaactgcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctcc |
310 |
Q |
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|||| |||||||||||||| ||||||||||| |||||||| | ||||||||||| | ||||| | || | ||| | |||||||||||||||||| || |
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| T |
36121924 |
caaagccaagtctctccatattccaaccaaatgcacaaaaagtacagaaaagtgataaatatgcttgagagatatcgtcccaaatgtcaagtattccacc |
36122023 |
T |
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| Q |
311 |
actccatttcggtctattttc |
331 |
Q |
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|||||| || ||||||||||| |
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| T |
36122024 |
actccactttggtctattttc |
36122044 |
T |
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