View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15016_low_1 (Length: 631)
Name: NF15016_low_1
Description: NF15016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15016_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 9 - 412
Target Start/End: Original strand, 24114750 - 24115163
Alignment:
| Q |
9 |
acatcatcaagaacatactcataatgtaacgaagtgaggagtccaataaaatctacaaaaaacgaatggtaagagagcaagttaatgaacacacatgacc |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| || |
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| T |
24114750 |
acatcatcaagaacatactcataatgtaacgaagtgaggagtccaataaaatctacaaaaaacaaatggtaagagagcaagttaatgaacacgcatggcc |
24114849 |
T |
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| Q |
109 |
aa----------aataaaacaaaacctatagagataacaacgaaccaactaagaggaagtaatccaagcgaggcctcaagattgcatcagtcttaatgca |
198 |
Q |
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| T |
24114850 |
aagcatgaccacaataaaacaaaacatacagagataacaacgaaccaactaagaggaagtaatccaagcgaggcctcaagattgcatcagtcttaatgca |
24114949 |
T |
|
| Q |
199 |
ggagagaccatatcgttggataagaaagctgtcatccaatacaacaacggtccttggatgcaatgttatcttgtggcgatttacggtagctttggaacaa |
298 |
Q |
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| T |
24114950 |
ggagagaccatatcgttggataagaaagctgtcatccaacacaacaacggtccttggatgcaatgttatcttgtggcgatttccggtagctttggaacaa |
24115049 |
T |
|
| Q |
299 |
ctcatgctctcagagacatgaaagatagcgagaatatacacgaaaaactcacgaaagacgtgaatgaaatagccaacacagtgacttggaatagtggcat |
398 |
Q |
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| T |
24115050 |
ctcatgctctcagagacatgaaagatagcgagaatatacacgaaaaactcacgaaagacatgaatgaaatagccaacacagtgacttggaatagtggcat |
24115149 |
T |
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| Q |
399 |
ggatcttattgccc |
412 |
Q |
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| T |
24115150 |
ggatcttattgccc |
24115163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 544 - 612
Target Start/End: Original strand, 24115291 - 24115359
Alignment:
| Q |
544 |
atataaagcagctcacatatgcaaacaaataaacaaaggcacgaggataaaataacaaccgcatgtaca |
612 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24115291 |
atataaagcagttcacatatgcaaacaaataaacaaagacacgaggataaaataacaaccgcatgtaca |
24115359 |
T |
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