View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15016_low_11 (Length: 245)
Name: NF15016_low_11
Description: NF15016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15016_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 3651186 - 3650950
Alignment:
| Q |
1 |
tctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgcttggcaaaac |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3651186 |
tctctaccaaaacctcaaactcattggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgcttggcaaaac |
3651087 |
T |
|
| Q |
101 |
aaccatcccctaaaagtaaatagatgaagaatcagcatcttaatcaatgaattttgtggaggtgataacatcctatatagaaagatatgactacttacgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3651086 |
aaccatcccctaaaagtaaatagatgaagaatcagcatcttaatcaatgaattttgtggaggtgataacatcatatatagaaagatatgactacttacgt |
3650987 |
T |
|
| Q |
201 |
attcaacatcaagatcgaaaacatacgtgcggtattt |
237 |
Q |
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|||||||||||||||||| |||||||||||||||||| |
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| T |
3650986 |
attcaacatcaagatcgacaacatacgtgcggtattt |
3650950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 38466943 - 38467157
Alignment:
| Q |
1 |
tctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgcttggcaaaac |
100 |
Q |
| |
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|||| |||||||||||||| |||||| |||||||||||||||||| || || ||||||||||| |||||||||||||| ||||| | | ||||||| || |
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| T |
38466943 |
tctcaaccaaaacctcaaattcgttgtagttacggtccaccaacatagcatatcgaccaagttcatccccaaagtcatgaccaaaaagggttggcaatac |
38467042 |
T |
|
| Q |
101 |
aaccatcccctaaaagtaaatagatgaagaatcagcatcttaatcaatgaattttgtggaggtgataacatcctatatagaaagatatgactacttacgt |
200 |
Q |
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| T |
38467043 |
aaccatcccgtgaaaaccaaaagataaaaaatcagcaattaaaccaatgtatttcgtggatatgataa-aacgtatatacagacacatcattacttacgt |
38467141 |
T |
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| Q |
201 |
attcaacatcaagatc |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
38467142 |
attcaacatcaagatc |
38467157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 19462519 - 19462449
Alignment:
| Q |
50 |
gtagcgaccaagttcgtccccaaagtcatggccaaacatgcttggcaaaacaaccatcccctaaaagtaaa |
120 |
Q |
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|||||| |||| || ||| |||||||||||||||||||| |||||||||||||| || |||||| |||||| |
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| T |
19462519 |
gtagcgtccaatttggtctccaaagtcatggccaaacattcttggcaaaacaactatgccctaatagtaaa |
19462449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 10196743 - 10196590
Alignment:
| Q |
1 |
tctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgcttggcaaaac |
100 |
Q |
| |
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|||| ||||||||||| ||||| || ||||| ||||||||| ||||||||| |||| || | ||||||||||||| ||||| || ||| || |||| |
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| T |
10196743 |
tctcgaccaaaacctcgaactcattatagttagaatccaccaaccttgcgtagcgtccaatttggcccccaaagtcatgaccaaagattcttagcgaaac |
10196644 |
T |
|
| Q |
101 |
aaccatcccctaaaagtaaatagatgaagaatcagcatcttaatcaatgaattt |
154 |
Q |
| |
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|||||| |||||| ||| |||| | |||||| || || ||||| ||||||||| |
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|
| T |
10196643 |
aaccatgccctaatagtcaataaaagaagaaacaaaatgttaataaatgaattt |
10196590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 35349756 - 35349683
Alignment:
| Q |
6 |
accaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatg |
79 |
Q |
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|||||||||||||| |||||| |||||| ||||||||||| || || ||||||||||| |||||||||||||| |
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| T |
35349756 |
accaaaacctcaaattcgttgtagttacagtccaccaacatagcatatcgaccaagttcatccccaaagtcatg |
35349683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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