View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15016_low_12 (Length: 233)

Name: NF15016_low_12
Description: NF15016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15016_low_12
NF15016_low_12
[»] chr8 (7 HSPs)
chr8 (1-217)||(23573165-23573382)
chr8 (31-143)||(2688877-2688987)
chr8 (13-99)||(22922152-22922239)
chr8 (6-110)||(22512343-22512448)
chr8 (6-47)||(23570340-23570381)
chr8 (23-95)||(26377776-26377849)
chr8 (43-141)||(24577811-24577909)
[»] chr6 (13 HSPs)
chr6 (6-143)||(18203141-18203277)
chr6 (33-142)||(34374058-34374167)
chr6 (13-139)||(22888963-22889090)
chr6 (9-139)||(22910506-22910637)
chr6 (13-99)||(30049617-30049704)
chr6 (13-99)||(30051904-30051991)
chr6 (20-143)||(12881729-12881852)
chr6 (13-99)||(3541947-3542034)
chr6 (13-139)||(22873520-22873647)
chr6 (13-139)||(12778659-12778784)
chr6 (34-97)||(32361109-32361172)
chr6 (156-207)||(34374239-34374290)
chr6 (49-98)||(18720019-18720068)
[»] chr5 (6 HSPs)
chr5 (1-143)||(21845180-21845323)
chr5 (33-143)||(18252124-18252234)
chr5 (44-99)||(19677629-19677684)
chr5 (6-46)||(40779082-40779122)
chr5 (1-36)||(21849261-21849296)
chr5 (1-36)||(21857175-21857210)
[»] chr7 (8 HSPs)
chr7 (6-137)||(4303119-4303251)
chr7 (33-138)||(11001097-11001202)
chr7 (49-134)||(1369529-1369614)
chr7 (24-101)||(1786422-1786500)
chr7 (6-143)||(13882978-13883117)
chr7 (33-141)||(8915444-8915551)
chr7 (6-143)||(1217455-1217591)
chr7 (13-139)||(11228430-11228556)
[»] chr2 (12 HSPs)
chr2 (6-137)||(31635997-31636129)
chr2 (13-143)||(35681910-35682041)
chr2 (33-133)||(280285-280385)
chr2 (13-99)||(2165624-2165711)
chr2 (6-106)||(27952620-27952721)
chr2 (43-143)||(32162248-32162347)
chr2 (33-143)||(33053125-33053234)
chr2 (34-143)||(22011088-22011197)
chr2 (22-73)||(23457411-23457462)
chr2 (61-143)||(18945657-18945739)
chr2 (13-76)||(36648646-36648710)
chr2 (13-86)||(36614857-36614931)
[»] chr1 (9 HSPs)
chr1 (13-208)||(10927746-10927939)
chr1 (42-138)||(10926905-10927001)
chr1 (13-143)||(23988929-23989060)
chr1 (6-138)||(13441884-13442015)
chr1 (42-101)||(8966032-8966091)
chr1 (13-135)||(40805571-40805694)
chr1 (6-139)||(31915245-31915382)
chr1 (154-207)||(31915123-31915176)
chr1 (154-207)||(40805444-40805497)
[»] chr4 (7 HSPs)
chr4 (6-143)||(22716318-22716456)
chr4 (6-143)||(22988761-22988899)
chr4 (6-133)||(6659625-6659751)
chr4 (20-143)||(10494628-10494752)
chr4 (44-139)||(7634998-7635093)
chr4 (13-99)||(13085393-13085483)
chr4 (154-207)||(10494509-10494562)
[»] scaffold0110 (1 HSPs)
scaffold0110 (13-99)||(45918-46005)
[»] scaffold0054 (3 HSPs)
scaffold0054 (9-139)||(10359-10490)
scaffold0054 (33-143)||(49018-49128)
scaffold0054 (42-78)||(37484-37520)
[»] chr3 (4 HSPs)
chr3 (6-143)||(365846-365983)
chr3 (6-84)||(3064034-3064113)
chr3 (33-143)||(8536654-8536764)
chr3 (154-207)||(3064181-3064234)
[»] scaffold0024 (2 HSPs)
scaffold0024 (34-139)||(145442-145547)
scaffold0024 (154-207)||(144354-144407)
[»] scaffold0240 (1 HSPs)
scaffold0240 (94-143)||(15709-15758)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 23573382 - 23573165
Alignment:
Q  1 tggtcaaataataaatactataaaattactaagaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaaga 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23573382 tggttaaataataaatactataaaattactaagaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaaga 23573283  T
Q  101 gtttcccatgcatgttgattcctccaatgaacaagagaccaccaccctcct-cttcccattgaaaaaatgtggtagcatgccggatactttctagatcca 199  Q
    | |||||||||||||||| ||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  23573282 gcttcccatgcatgttgactcctccaatgaacaaaagaccaccaccctcctggttcccattgaaaaaatgtggtagcatgccggatactttctagatcca 23573183  T
Q  200 tcattttacccaaagtaa 217  Q
    ||||||||||||||||||    
T  23573182 tcattttacccaaagtaa 23573165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 143
Target Start/End: Complemental strand, 2688987 - 2688877
Alignment:
Q  31 aagaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatga 130  Q
    |||||||||| |||||| |||||||||||||| |||||||||||| |  ||||| ||||| | |||  |||||||||||||||||||| |||||||||||    
T  2688987 aagaaaccctcctacatgagtctcctccacctatgaagaactcgatcacgagttctcattctaata--gagtttcccatgcatgttgactcctccaatga 2688890  T
Q  131 acaagagaccacc 143  Q
    ||| |||| ||||    
T  2688889 acatgagatcacc 2688877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 22922152 - 22922239
Alignment:
Q  13 aaatactataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaag 99  Q
    ||||||||||||||||||||| || |||| |||||| |||||||||||||||||||||||||||||| ||||| |||| || ||||||    
T  22922152 aaatactataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttcataaag 22922239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 22512343 - 22512448
Alignment:
Q  6 aaataataaatactataaaattactaagaaacc-cttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagttt 104  Q
    |||||||||||||||  |||||||||| ||| | || || ||| |||||||||||||||| ||||||||||||| ||||| | ||| ||||||  || ||    
T  22512343 aaataataaatactactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattctgataagaagctt 22512442  T
Q  105 cccatg 110  Q
    ||||||    
T  22512443 cccatg 22512448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 23570381 - 23570340
Alignment:
Q  6 aaataataaatactataaaattactaagaaacccttctacat 47  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  23570381 aaataataaatactataaaattactaagaaaccctcctacat 23570340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 26377849 - 26377776
Alignment:
Q  23 aaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgat 95  Q
    |||||||||||||| |||| |||||| |||||||||||||| |||||||||||||||  |||| ||||| ||||    
T  26377849 aaattactaagaaaaccctcctacatcagtctcctccacctttgaagaactcgaccccaagttctcattctgat 26377776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 24577811 - 24577909
Alignment:
Q  43 tacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaacaagagacca 141  Q
    ||||| |||||||||||| ||||||||| ||||||  ||||| || || ||||| |||  ||| | ||||| || | ||||||||| ||||||||||||    
T  24577811 tacatcagtctcctccacttctgaagaattcgaccttgagttctccttctgatacagaacttcgcttgcatatttactcctccaataaacaagagacca 24577909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 18203277 - 18203141
Alignment:
Q  6 aaataataaatactataaaattactaagaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttc 105  Q
    ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||     
T  18203277 aaataataaatactataaaattactgagaaaccctcctacatcagtctcctccacctctgaagaactcgaccc-gagttctcattttaataaagagtttt 18203179  T
Q  106 ccatgcatgttgattcctccaatgaacaagagaccacc 143  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  18203178 ccatgcatgttgactcctcgaatgaacaagagaccacc 18203141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 33 - 142
Target Start/End: Original strand, 34374058 - 34374167
Alignment:
Q  33 gaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaac 132  Q
    ||||||||  |||||||||||||||||| |||||||||||| |||| ||||| |||||||||||||||| |||||||||||||||| || ||||||||||    
T  34374058 gaaaccctcttacattagtctcctccacatctgaagaactccaccccgagttctcattttgataaagagattcccatgcatgttgactcttccaatgaac 34374157  T
Q  133 aagagaccac 142  Q
    ||||||||||    
T  34374158 aagagaccac 34374167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 22889090 - 22888963
Alignment:
Q  13 aaatactataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgc 111  Q
    ||||||||  |||||||||||||| |||| |||||| |||||| ||||||||| | ||| | |||||  |||| ||||| |||||||||| |||||||||    
T  22889090 aaatactaataaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgc 22888991  T
Q  112 atgttgattcctccaatgaacaagagac 139  Q
    || |||| ||||||||||||||||||||    
T  22888990 atattgactcctccaatgaacaagagac 22888963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 22910637 - 22910506
Alignment:
Q  9 taataaatactataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttccc 107  Q
    ||||||||||||  |||||||||||||| |||| |||||| |||||| ||||||||| | ||| | |||||  |||| ||||| |||||||||| |||||    
T  22910637 taataaatactaataaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttccc 22910538  T
Q  108 atgcatgttgattcctccaatgaacaagagac 139  Q
    ||| || |||| ||||||||||||||||||||    
T  22910537 atgtatattgactcctccaatgaacaagagac 22910506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 30049704 - 30049617
Alignment:
Q  13 aaatactataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaag 99  Q
    ||||||||||||||||||||| || |||| |||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  30049704 aaatactataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 30049617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 30051991 - 30051904
Alignment:
Q  13 aaatactataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaag 99  Q
    ||||||||||||||||||||| || |||| |||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  30051991 aaatactataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 30051904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 12881852 - 12881729
Alignment:
Q  20 ataaaattactaag-aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttga 118  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||  |||||||||||||| ||| | |||||  ||| ||||  ||||||||||||||||    
T  12881852 ataaaattactaaggaaaccctcctacatcagtctcctccacctaagaagaactcgaccccgagctctcattccgat-aagaacttcccatgcatgttga 12881754  T
Q  119 ttcctccaatgaacaagagaccacc 143  Q
     | || |||||||||||||||||||    
T  12881753 cttcttcaatgaacaagagaccacc 12881729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 3542034 - 3541947
Alignment:
Q  13 aaatactataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaag 99  Q
    ||||||| ||||||||||||| || |||| |||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  3542034 aaatactttaaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 3541947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 22873647 - 22873520
Alignment:
Q  13 aaatactataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgc 111  Q
    ||||||||  |||||| ||||||| |||| |||||| |||||| ||||||||| | ||| |||| ||  |||| ||||| |||||||||| |||||||||    
T  22873647 aaatactaataaattattaagaaaaccctcctacatcagtctcatccacctctaaggaaatcgatcccaagttctcattatgataaagagcttcccatgc 22873548  T
Q  112 atgttgattcctccaatgaacaagagac 139  Q
    || |||| ||||||||||||||||||||    
T  22873547 atattgactcctccaatgaacaagagac 22873520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 12778659 - 12778784
Alignment:
Q  13 aaatactataaaattactaagaaacccttct-acattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgc 111  Q
    |||||||||| || ||||| |||| || ||| |||| |||||||||||||||||||||||| |||||  | || ||||| |||||  ||||||||  |||    
T  12778659 aaatactatagaaatactatgaaaaccctcttacatcagtctcctccacctctgaagaacttgaccccaaattctcattctgata--gagtttcctttgc 12778756  T
Q  112 atgttgattcctccaatgaacaagagac 139  Q
    ||||||| ||||||||||||||||||||    
T  12778757 atgttgactcctccaatgaacaagagac 12778784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 32361172 - 32361109
Alignment:
Q  34 aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataa 97  Q
    ||||||| |||||||||||| |||||||||| || |||||||||  ||||| ||||| ||||||    
T  32361172 aaaccctcctacattagtcttctccacctctaaaaaactcgacctcgagttctcattatgataa 32361109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 34374239 - 34374290
Alignment:
Q  156 ccattgaaaaaatgtggtagcatgccggatactttctagatccatcatttta 207  Q
    ||||||| ||||||| ||||||||| |||||| || ||||||||||||||||    
T  34374239 ccattgagaaaatgtagtagcatgctggatacattatagatccatcatttta 34374290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 18720068 - 18720019
Alignment:
Q  49 agtctcctccacctctgaagaactcgacccggagttttcattttgataaa 98  Q
    |||||||||||||| ||||||||||||||| || || | |||||||||||    
T  18720068 agtctcctccacctttgaagaactcgaccccgaattctaattttgataaa 18720019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 21845180 - 21845323
Alignment:
Q  1 tggtcaaataataaatactataaaattactaagaaacccttcta-cattagtctcctccacctctgaagaactcgacccggagttttcattttgataaag 99  Q
    |||| ||||||||||||||||||||||||||||||| || |||  ||| |||||  ||||||||||||||||||||||| ||||| ||||| ||||||||    
T  21845180 tggttaaataataaatactataaaattactaagaaaaccctcttgcatcagtctgttccacctctgaagaactcgaccccgagttctcattctgataaag 21845279  T
Q  100 agtttcccatgcatgttgattcctccaatgaacaagagaccacc 143  Q
    || |||||||||||||||| ||||||||||||||||| ||||||    
T  21845280 agcttcccatgcatgttgactcctccaatgaacaagaaaccacc 21845323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 18252234 - 18252124
Alignment:
Q  33 gaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaac 132  Q
    |||||||| || ||| || |||||| |||||||||||||| ||||| ||||| ||||| ||||||| || || |||||||||| || |||||||||| ||    
T  18252234 gaaaccctcctgcatcagcctcctctacctctgaagaacttgaccccgagttctcattatgataaacagctttccatgcatgtggactcctccaatggac 18252135  T
Q  133 aagagaccacc 143  Q
    |||||||||||    
T  18252134 aagagaccacc 18252124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 19677629 - 19677684
Alignment:
Q  44 acattagtctcctccacctctgaagaactcgacccggagttttcattttgataaag 99  Q
    |||| |||||||||||||||||||||||||||||| ||||| |||| || ||||||    
T  19677629 acatcagtctcctccacctctgaagaactcgaccccgagttctcatctttataaag 19677684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 40779082 - 40779122
Alignment:
Q  6 aaataataaatactataaaattactaagaaacccttctaca 46  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  40779082 aaataataaatactgtaaaattactaagaaaccctcctaca 40779122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21849261 - 21849296
Alignment:
Q  1 tggtcaaataataaatactataaaattactaagaaa 36  Q
    |||| |||||||||||||||||||||||||||||||    
T  21849261 tggttaaataataaatactataaaattactaagaaa 21849296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21857175 - 21857210
Alignment:
Q  1 tggtcaaataataaatactataaaattactaagaaa 36  Q
    |||| |||||||||||||||||||||||||||||||    
T  21857175 tggttaaataataaatactataaaattactaagaaa 21857210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 4303251 - 4303119
Alignment:
Q  6 aaataataaatactataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagttt 104  Q
    |||||||||||||||  |||||||||| ||| |||| |||||| ||||||||||||||||||||||||||| || ||||| |||||||||||||||| ||    
T  4303251 aaataataaatactactaaattactaataaaaccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagctt 4303152  T
Q  105 cccatgcatgttgattcctccaatgaacaagag 137  Q
    ||||||||||| || ||||||||||||||||||    
T  4303151 cccatgcatgtcgactcctccaatgaacaagag 4303119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 33 - 138
Target Start/End: Original strand, 11001097 - 11001202
Alignment:
Q  33 gaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaac 132  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||  | || ||||| |||||||||| |||||||||||||| | ||||||||||||     
T  11001097 gaaaccctcctacatcagtctcctccacctctgaagaactcgaccccaaattctcattgtgataaagagcttcccatgcatgttaactcctccaatgaaa 11001196  T
Q  133 aagaga 138  Q
    ||||||    
T  11001197 aagaga 11001202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 1369614 - 1369529
Alignment:
Q  49 agtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaacaa 134  Q
    ||||||||||||||||||||||||||| || ||||| | ||| |||||||||| |||||||| ||||||| |||||||||||||||    
T  1369614 agtctcctccacctctgaagaactcgagcccgagttcttattctgataaagagcttcccatgaatgttgactcctccaatgaacaa 1369529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 1786500 - 1786422
Alignment:
Q  24 aattactaagaaacccttc-tacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagag 101  Q
    ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  1786500 aattactaagaaaaccttcctacatgagtctcctccacctctgaagaactcgacctcgagttctcattttgataaagag 1786422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 13882978 - 13883117
Alignment:
Q  6 aaataataaatactataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagttt 104  Q
    |||||||||||||||  |||||||||| ||| |||| || ||| |||||| ||||||||| ||||||||||||| ||||| ||||| | |||||||| ||    
T  13882978 aaataataaatactactaaattactaataaaaccctcctgcatcagtctcgtccacctctaaagaactcgaccc-gagttctcattctaataaagagatt 13883076  T
Q  105 cccatgc--atgttgattcctccaatgaacaagagaccacc 143  Q
    | |||||  ||||||  ||||||||| ||||||||||||||    
T  13883077 ctcatgcatatgttggctcctccaataaacaagagaccacc 13883117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 8915444 - 8915551
Alignment:
Q  33 gaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaac 132  Q
    |||||||| |||||| ||||||||||| |||||||||||| ||||| || || ||||| | ||||| ||  ||||||||||||||| |||||| ||||||    
T  8915444 gaaaccctcctacatcagtctcctccatctctgaagaactagaccccgaattctcattctaataaaaag-ctcccatgcatgttgactcctccgatgaac 8915542  T
Q  133 aagagacca 141  Q
    |||||||||    
T  8915543 aagagacca 8915551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 1217455 - 1217591
Alignment:
Q  6 aaataataaatactataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagttt 104  Q
    |||||||||||||||   ||||||||| ||| |||| || ||| |||||||||||||| ||||||||||||||| |||||  | ||||||||||||| ||    
T  1217455 aaataataaatactactgaattactaataaaaccctcctgcatcagtctcctccacctttgaagaactcgaccc-gagttcacgttttgataaagagatt 1217553  T
Q  105 cccatgcatgttgattcctccaatgaacaagagaccacc 143  Q
      ||||||||| |  ||||||||| ||||||||||||||    
T  1217554 -tcatgcatgtcgtgtcctccaattaacaagagaccacc 1217591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 11228556 - 11228430
Alignment:
Q  13 aaatactataaaattactaag-aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgc 111  Q
    ||||||||||||||||||| | ||||| | |||||| ||||| |||| ||||| ||||||| | ||| ||||| ||||| | |||||||  |||||||||    
T  11228556 aaatactataaaattactatggaaaccatcctacatcagtcttctcc-cctcttaagaacttgcccccgagttctcattctaataaagaacttcccatgc 11228458  T
Q  112 atgttgattcctccaatgaacaagagac 139  Q
    ||| ||| ||||  ||||||||||||||    
T  11228457 atgatgactcctataatgaacaagagac 11228430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 31636129 - 31635997
Alignment:
Q  6 aaataataaatactataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagttt 104  Q
    |||||||||||||||  |||||||||| ||| |||| |||||| |||||||||||||||||||||||||||  | ||||| |||||| ||||||||||||    
T  31636129 aaataataaatactactaaattactaataaaaccctcctacatcagtctcctccacctctgaagaactcgaatccgagttctcatttagataaagagttt 31636030  T
Q  105 cccatgcatgttgattcctccaatgaacaagag 137  Q
    |||||||||||||| ||||||||||||||||||    
T  31636029 cccatgcatgttgactcctccaatgaacaagag 31635997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 35682041 - 35681910
Alignment:
Q  13 aaatactataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgc 111  Q
    |||||||||||||||||||||||| |||| || ||| ||||||||||||||||||||||||||||||  |||| || || |||||||||| || | ||||    
T  35682041 aaatactataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccaagttctctttctgataaagagctttctatgc 35681942  T
Q  112 atgttgattcctccaatgaacaagagaccacc 143  Q
    ||||||| |||| |||||||||||||||||||    
T  35681941 atgttgactccttcaatgaacaagagaccacc 35681910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 280285 - 280385
Alignment:
Q  33 gaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaac 132  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||| |||||||||||| |||||||||||||    
T  280285 gaaactcttctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcacatgcatgttgaatcctccaatgaac 280384  T
Q  133 a 133  Q
    |    
T  280385 a 280385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 2165711 - 2165624
Alignment:
Q  13 aaatactataaaattactaag-aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaag 99  Q
    ||||||||||||||||||||| |||| || |||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  2165711 aaatactataaaattactaaggaaactctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 2165624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 27952620 - 27952721
Alignment:
Q  6 aaataataaatactataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagttt 104  Q
    |||||||||||||||  |||||| ||| ||| |||| |||||| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||    
T  27952620 aaataataaatactactaaattattaataaaaccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagctt 27952719  T
Q  105 cc 106  Q
    ||    
T  27952720 cc 27952721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 32162248 - 32162347
Alignment:
Q  43 tacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaacaagagaccac 142  Q
    ||||||||||||||||| ||||||| ||||| |||  ||||| ||||| |||||||||| |||||||||||||||| | ||| |||||||||||||||||    
T  32162248 tacattagtctcctccatctctgaaaaactcaaccttgagttctcattctgataaagagcttcccatgcatgttgact-ctctaatgaacaagagaccac 32162346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 33053234 - 33053125
Alignment:
Q  33 gaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaac 132  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| | ||| | ||| | |||||||| ||| ||| ||||| || ||||| ||| |||    
T  33053234 gaaacccttctacatcagtctcctccacctctgaagaactcgaccccg-gttcttattctaataaagagcttctcattcatgtcgactcctctaataaac 33053136  T
Q  133 aagagaccacc 143  Q
    |||||||||||    
T  33053135 aagagaccacc 33053125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 22011197 - 22011088
Alignment:
Q  34 aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaaca 133  Q
    ||||||| || ||| | |||||||||||||| ||||||||||||| ||||| ||||| | ||||||| |||| |||| ||||||| |||| | |||||||    
T  22011197 aaaccctcctgcatcactctcctccacctctaaagaactcgaccctgagttctcattctaataaagaatttctcatgtatgttgactccttcgatgaaca 22011098  T
Q  134 agagaccacc 143  Q
    ||| ||||||    
T  22011097 agataccacc 22011088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 23457462 - 23457411
Alignment:
Q  22 aaaattactaagaaacccttctacattagtctcctccacctctgaagaactc 73  Q
    ||||||||||||||| ||| |||||| |||| ||||||||||||||||||||    
T  23457462 aaaattactaagaaaacctcctacatcagtcgcctccacctctgaagaactc 23457411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 18945739 - 18945657
Alignment:
Q  61 ctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaacaagagaccacc 143  Q
    ||||||| ||||||| || || || ||||| |||| ||||||||| ||| |||||| | |||| |||||||||||||||||||    
T  18945739 ctctgaaaaactcgatcccgaattctcattctgattaagagtttctcattcatgttaactcctgcaatgaacaagagaccacc 18945657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 36648710 - 36648646
Alignment:
Q  13 aaatactataaaattactaag-aaacccttctacattagtctcctccacctctgaagaactcgac 76  Q
    ||||||||  ||||||||||| ||||||| |||||| ||||||||||| || |||||||||||||    
T  36648710 aaatactaataaattactaaggaaaccctcctacatgagtctcctccatctatgaagaactcgac 36648646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 36614931 - 36614857
Alignment:
Q  13 aaatactataaaattactaag-aaacccttctacattagtctcctccacctctgaagaactcgacccggagtttt 86  Q
    ||||||||  ||||||||||| ||||||| |||| | ||||||||||| || ||||||||||||| | |||||||    
T  36614931 aaatactaataaattactaaggaaaccctcctacgtgagtctcctccatctatgaagaactcgactccgagtttt 36614857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 10927939 - 10927746
Alignment:
Q  13 aaatactataaaattactaag-aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgc 111  Q
    ||||||||||||||||||||| ||||||| |||||  |||||||||||| ||||||||||||||||| ||||| ||||| | |||||||||||| |||||    
T  10927939 aaatactataaaattactaaggaaaccctcctacaacagtctcctccacttctgaagaactcgaccccgagttctcattctaataaagagtttctcatgc 10927840  T
Q  112 atgttgattcctccaatgaacaagagaccaccaccctcct-cttcccattgaaaaaatgtggtagcatgccggatactttctagatccatcattttac 208  Q
    | ||||| || | |||| |||||||||||    |||||||   |||||||||| |||||| ||| ||||||| |||||||||||||||  ||||||||    
T  10927839 aagttgactcttacaataaacaagagacc----ccctcctagatcccattgaagaaatgtagtaacatgccgaatactttctagatcctccattttac 10927746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 10927001 - 10926905
Alignment:
Q  42 ctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaacaagaga 138  Q
    |||||| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||  |||||||||||||||| |||||||||||| ||||||    
T  10927001 ctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagaacttcccatgcatgttgactcctccaatgaataagaga 10926905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 23989060 - 23988929
Alignment:
Q  13 aaatactataaaattactaag-aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgc 111  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||  ||||| || ||||| ||||||| ||||| |||    
T  23989060 aaatactatgaaattactaaggaaaccctcctacattagtctcctacacctctgaagaactcgaccttgagttctcgttttggtaaagagcttcccttgc 23988961  T
Q  112 atgttgattcctccaatgaacaagagaccacc 143  Q
    ||||| | |||| |||||| ||||||| ||||    
T  23988960 atgttaactccttcaatgagcaagagatcacc 23988929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 13441884 - 13442015
Alignment:
Q  6 aaataataaatactataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagttt 104  Q
    |||||||||||||||  |||||||||| ||| ||||||| ||| |||||||||||||||||||||| |||| |   |||| ||||| |||||||||| ||    
T  13441884 aaataataaatactactaaattactaacaaaacccttctgcatcagtctcctccacctctgaagaattcgatca--agttctcattctgataaagagctt 13441981  T
Q  105 cccatgcatgttgattcctccaatgaacaagaga 138  Q
    |||||||||||||| ||||||||||| |||||||    
T  13441982 cccatgcatgttgactcctccaatgagcaagaga 13442015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 8966032 - 8966091
Alignment:
Q  42 ctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagag 101  Q
    |||||| |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||    
T  8966032 ctacatcagtctcctccacctctgaagaactcgaccctgagttctcattctgataaagag 8966091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 40805694 - 40805571
Alignment:
Q  13 aaatactataaaattactaag-aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgc 111  Q
    |||||||| ||||||| |||| ||||  | |||||| |||||||||||||| | ||||| ||||||| ||||| |  || |||||| ||||||| |||||    
T  40805694 aaatactacaaaattaataaggaaactatcctacatcagtctcctccacctttaaagaagtcgaccccgagttcttgttctgataaggagtttcacatgc 40805595  T
Q  112 atgttgattcctccaatgaacaag 135  Q
    ||| ||| |||||| |||||||||    
T  40805594 atgatgactcctccgatgaacaag 40805571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 139
Target Start/End: Complemental strand, 31915382 - 31915245
Alignment:
Q  6 aaataataaatactataaaattactaa-gaaacccttctacattagt---ctcctccacctctgaagaactcgacccggagttttcattttgataaagag 101  Q
    |||||||||||||||  ||||||||||  |||||||  | ||| |||   |||||||||||||||||||||| |||| ||||| || || | || |||||    
T  31915382 aaataataaatactactaaattactaataaaaccctcatgcatcagtctcctcctccacctctgaagaactcaaccccgagttctcgttctaat-aagag 31915284  T
Q  102 tttcccatgca-tgttgattcctccaatgaacaagagac 139  Q
    ||| |||| || |||||| ||||||||||||||||||||    
T  31915283 ttttccattcattgttgactcctccaatgaacaagagac 31915245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 31915176 - 31915123
Alignment:
Q  154 tcccattgaaaaaatgtggtagcatgccggatactttctagatccatcatttta 207  Q
    |||||||||| |||||  ||||||||| | ||| ||||||||||||||||||||    
T  31915176 tcccattgaagaaatgcagtagcatgctgaatattttctagatccatcatttta 31915123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 40805497 - 40805444
Alignment:
Q  154 tcccattgaaaaaatgtggtagcatgccggatactttctagatccatcatttta 207  Q
    |||||||||| |||||| ||||||||| | |||| ||||| |||||||||||||    
T  40805497 tcccattgaagaaatgtagtagcatgctgaatacattctaaatccatcatttta 40805444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 22716456 - 22716318
Alignment:
Q  6 aaataataaatactataaaattactaagaaacc-cttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagttt 104  Q
    |||||||||||||||| |||||||||| ||| | |  || ||| ||||||||||| |||| ||||||||||||| ||||| |||||||||||||||| ||    
T  22716456 aaataataaatactattaaattactaataaaactcaactgcatcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagctt 22716357  T
Q  105 cccatgcatgttgattcctccaatgaacaagagaccacc 143  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  22716356 cccattcatgttgactcctccaatgaacaagagaccacc 22716318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 22988761 - 22988899
Alignment:
Q  6 aaataataaatactataaaattactaagaaacc-cttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagttt 104  Q
    |||||||||||||||| |||||||||| ||| | |  || ||| ||||||||||| |||| ||||||||||||| ||||| |||||||||||||||| ||    
T  22988761 aaataataaatactattaaattactaataaaactcaactgcatcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagctt 22988860  T
Q  105 cccatgcatgttgattcctccaatgaacaagagaccacc 143  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  22988861 cccattcatgttgactcctccaatgaacaagagaccacc 22988899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 133
Target Start/End: Original strand, 6659625 - 6659751
Alignment:
Q  6 aaataataaatactataaaattactaagaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttc 105  Q
    |||||||||||||| |||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||  | || |||| ||||||||||| |||    
T  6659625 aaataataaatactgtaaaattactaagaaaccctcctacatcagtctcctctacctctgaagaactcgaccc-aaattctcatcttgataaagagcttc 6659723  T
Q  106 ccatgcatgttgattcctccaatgaaca 133  Q
    ||||| || |||| |||||||| |||||    
T  6659724 ccatgaatattgactcctccaaagaaca 6659751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 10494752 - 10494628
Alignment:
Q  20 ataaaattactaag-aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttga 118  Q
    |||||| ||||||| |||||||  ||||| ||||| ||| || ||||||||||||||||   |||| | ||  ||||||| || ||||||||||||| ||    
T  10494752 ataaaaatactaaggaaaccctcatacatcagtcttctctacttctgaagaactcgacctcaagttctgatcctgataaatagcttcccatgcatgtcga 10494653  T
Q  119 ttcctccaatgaacaagagaccacc 143  Q
     ||||||||||||||||||||||||    
T  10494652 ctcctccaatgaacaagagaccacc 10494628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 139
Target Start/End: Complemental strand, 7635093 - 7634998
Alignment:
Q  44 acattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaacaagagac 139  Q
    |||| ||||||||||| ||||||||||||||||||  | || ||||| | ||||| || | |||||||||||||| |||||| |||||||||||||    
T  7635093 acatcagtctcctccatctctgaagaactcgaccccaaattctcattctaataaaaagctccccatgcatgttgactcctccgatgaacaagagac 7634998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 13085393 - 13085483
Alignment:
Q  13 aaatactataaaattactaagaaa----cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaag 99  Q
    |||||||||||||||||||| |||    |||| |||||| |||||| |||| |||||||||||||||||| ||||| |||| |||||||||    
T  13085393 aaatactataaaattactaaaaaaaacaccctcctacatcagtctcttccatctctgaagaactcgaccccgagttctcatcttgataaag 13085483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 10494562 - 10494509
Alignment:
Q  154 tcccattgaaaaaatgtggtagcatgccggatactttctagatccatcatttta 207  Q
    |||||||||| |||||| | ||||||| |  |||||||||||||||||||||||    
T  10494562 tcccattgaagaaatgtagaagcatgctgagtactttctagatccatcatttta 10494509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 45918 - 46005
Alignment:
Q  13 aaatactataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaag 99  Q
    ||||||||||||||||||||| || |||| |||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  45918 aaatactataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 46005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 10490 - 10359
Alignment:
Q  9 taataaatactataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttccc 107  Q
    ||||||||||||  |||||||||||||| |||| |||||| |||||| ||||||||| | ||| | |||||  |||| ||||| |||||||||| |||||    
T  10490 taataaatactaataaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttccc 10391  T
Q  108 atgcatgttgattcctccaatgaacaagagac 139  Q
    ||| || |||| ||||||||||||||||||||    
T  10390 atgaatattgactcctccaatgaacaagagac 10359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 49128 - 49018
Alignment:
Q  33 gaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgat-aaagagtttcccatgcatgttgattcctccaatgaa 131  Q
    ||||| || |||||| ||||||||||||||||||||||||| |||| ||||| | ||| |||| |||||  || ||||||||||||| || ||| |||||    
T  49128 gaaactctcctacatcagtctcctccacctctgaagaactcaaccccgagttcttattctgataaaagaactt-ccatgcatgttgactcttcctatgaa 49030  T
Q  132 caagagaccacc 143  Q
    || |||| ||||    
T  49029 cacgagaacacc 49018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 37520 - 37484
Alignment:
Q  42 ctacattagtctcctccacctctgaagaactcgaccc 78  Q
    |||||| ||||||||||||||||||||||||||||||    
T  37520 ctacatcagtctcctccacctctgaagaactcgaccc 37484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 365846 - 365983
Alignment:
Q  6 aaataataaatactataaaattactaagaaac-ccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagttt 104  Q
    |||||||||||||||  |||||||||| |||  ||| || ||| | |||||||||||||||||||||||||||  ||||| || ||||||||||||| ||    
T  365846 aaataataaatactactaaattactaataaaatcctcctgcatcaatctcctccacctctgaagaactcgacctcgagttctcgttttgataaagagctt 365945  T
Q  105 cccatgcatgttgattcctccaatgaacaagagaccacc 143  Q
     ||||| ||||||| || ||||||||||| |||||||||    
T  365946 -ccatgtatgttgactcttccaatgaacaggagaccacc 365983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 3064034 - 3064113
Alignment:
Q  6 aaataataaatactataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagtt 84  Q
    |||||||||||||||  |||||||||| ||| |||| || ||| |||||||||||||||||||||||||||||| |||||    
T  3064034 aaataataaatactactaaattactaacaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagtt 3064113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 143
Target Start/End: Original strand, 8536654 - 8536764
Alignment:
Q  33 gaaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgcatgttgattcctccaatgaac 132  Q
    |||||||| |||||| || ||| ||||||||| ||||||||||| | ||||| | ||| ||||||| |||||| |||  ||||||| || ||||||||||    
T  8536654 gaaaccctcctacatcagcctcttccacctctaaagaactcgactccgagttcttattctgataaaaagtttctcatatatgttgactcttccaatgaac 8536753  T
Q  133 aagagaccacc 143  Q
    |||||| ||||    
T  8536754 aagagatcacc 8536764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 3064181 - 3064234
Alignment:
Q  154 tcccattgaaaaaatgtggtagcatgccggatactttctagatccatcatttta 207  Q
    |||||||||| | |||| ||||||| ||  ||||||||||||||||||||||||    
T  3064181 tcccattgaacatatgtagtagcataccaaatactttctagatccatcatttta 3064234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 145547 - 145442
Alignment:
Q  34 aaacccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagtttcccatgca-tgttgattcctccaatgaac 132  Q
    ||||||| |||||| ||||||||||||||| |||||||| ||||| ||||| | ||| ||||||||||||  || | || |||||| |||| ||||||||    
T  145547 aaaccctcctacatcagtctcctccacctcagaagaacttgaccc-gagttattattctgataaagagttgtccgttcattgttgactccttcaatgaac 145449  T
Q  133 aagagac 139  Q
    |||||||    
T  145448 aagagac 145442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 144354 - 144407
Alignment:
Q  154 tcccattgaaaaaatgtggtagcatgccggatactttctagatccatcatttta 207  Q
    |||||||||| |||||| ||||||||||| ||||  |||| |||||||||||||    
T  144354 tcccattgaagaaatgtagtagcatgccgaatacgctctaaatccatcatttta 144407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 15758 - 15709
Alignment:
Q  94 ataaagagtttcccatgcatgttgattcctccaatgaacaagagaccacc 143  Q
    |||||||  ||| |||||||||||| |||||||||||||| |||||||||    
T  15758 ataaagaacttctcatgcatgttgactcctccaatgaacaggagaccacc 15709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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