View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15016_low_14 (Length: 216)
Name: NF15016_low_14
Description: NF15016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15016_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 33141102 - 33141299
Alignment:
| Q |
1 |
gagtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatggcgataaggttaatgctgaacattagctagcttcactgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33141102 |
gagtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatggcgataaggttaatgctgaacattagctagcttcactgg |
33141201 |
T |
|
| Q |
101 |
tctttggcatcggcaaactatatgtcctatgtttaattattgcattttcttcttggtcttctttatggtcatttgagtgtgagatcatctttgtcagt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33141202 |
tctttggcatcggcaaactatatgtcctatgtttaattattgcattttcttcttggtcttctttatggtcatttgagtgtgagatcatctttgtcagt |
33141299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 33159723 - 33159783
Alignment:
| Q |
2 |
agtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatgg |
62 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| |
|
|
| T |
33159723 |
agtgtccagattgtcaccgcacaatggaagtgtatatcagctacaagtgctgccataatgg |
33159783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 33182567 - 33182627
Alignment:
| Q |
2 |
agtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatgg |
62 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| |
|
|
| T |
33182567 |
agtgtccagattgtcaccgcacaatggaagtgtatatcagctacaagtgctgccataatgg |
33182627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 33287004 - 33286948
Alignment:
| Q |
1 |
gagtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccat |
57 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
33287004 |
gagtgtccagattgtcgtcgcagaatggaagtgtttattacctacaagtgttgccat |
33286948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University