View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15016_low_2 (Length: 583)
Name: NF15016_low_2
Description: NF15016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15016_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 23 - 570
Target Start/End: Complemental strand, 23237293 - 23236752
Alignment:
| Q |
23 |
gagaggcagtccaattaacctatcatcaaacggttaagaagggatcagtaagtgcttgatctctgctatatctcaatgtttgtgtgacatccatatccac |
122 |
Q |
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| T |
23237293 |
gagaggcagtccaattaacctatcatcaaacggttaagaagggatcagtaagtgcttgatctctgctatatctcaatgtttgtgtgacatccatatccac |
23237194 |
T |
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| Q |
123 |
caagcctataccaattgttcaaatgttctatcaaacataggttttgtagatgcatcatcactacaaataggagttcctgagatactagttgtagtcggtt |
222 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | ||||| || | ||| | || |
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| T |
23237193 |
caaggctataccaattgttcaaatgttctatcaaacataggttttgtagatgcatcaacactacaaataggagatc-tacgatacaagctatagccagtg |
23237095 |
T |
|
| Q |
223 |
ttctaaaattctagtgttaactcataaactcggacaagtttaagtttttaattgtgaatttagtcttaattgtctcaggctattcagaatgaacaagcca |
322 |
Q |
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| T |
23237094 |
ttctaaaactctagtgttaactcataaactcggatgagtttaagtttctaattgtaaatttagttttaattgtcgcaggctattcagaatgaacaaacca |
23236995 |
T |
|
| Q |
323 |
tacagattgtgtcaggctattgttgaacattcagattattgtttccataattctgaagattggattgttcacttgataatcattcaaaatcaagattgtt |
422 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| || ||||| ||||||||||||| |
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| T |
23236994 |
tacagattgtgtcaggctattgttgaacattcagattgttgtttccataattctgaatattagattgttcacttaat----attcagaatcaagattgtt |
23236899 |
T |
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| Q |
423 |
cacttaataattcaagtctactcaaatcctgaaatagggaacatgctcctggcgaaggaacatctctcctttaatgggaggaatttttcatctctttcga |
522 |
Q |
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| T |
23236898 |
cacttaataattcaagtctactcaaat-ctaaaatacggaaaattctccaggcggcggaacatctctcctgcaatgggaggaatttttcacctctttcga |
23236800 |
T |
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| Q |
523 |
gttagtcactttcccgttaaaaataatatttttcctctaacctatgct |
570 |
Q |
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| T |
23236799 |
gttagtcactttcccgttaaaaataatgtatttcctctaccctatgct |
23236752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 3708955 - 3709023
Alignment:
| Q |
223 |
ttctaaaattctagtgttaactcataaactcggacaagtttaagtttttaattgtgaatttagtcttaa |
291 |
Q |
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|||| ||| |||||||||||| | |||||| | ||||||||||||||||| |||||||||||| |||| |
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| T |
3708955 |
ttctcaaactctagtgttaacccgtaaactagctcaagtttaagtttttaaatgtgaatttagtattaa |
3709023 |
T |
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