View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15016_low_5 (Length: 438)

Name: NF15016_low_5
Description: NF15016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15016_low_5
NF15016_low_5
[»] chr4 (2 HSPs)
chr4 (141-432)||(22450325-22450615)
chr4 (18-140)||(9981884-9982021)
[»] chr7 (3 HSPs)
chr7 (18-140)||(5569135-5569272)
chr7 (18-140)||(3614516-3614654)
chr7 (18-140)||(35611893-35612004)
[»] scaffold1903 (1 HSPs)
scaffold1903 (18-140)||(970-1107)
[»] chr6 (2 HSPs)
chr6 (303-432)||(6198501-6198628)
chr6 (216-258)||(6198440-6198482)
[»] chr3 (2 HSPs)
chr3 (141-243)||(51700122-51700224)
chr3 (78-121)||(33129742-33129785)
[»] chr2 (1 HSPs)
chr2 (141-263)||(38973854-38973976)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 141 - 432
Target Start/End: Original strand, 22450325 - 22450615
Alignment:
Q  141 ggttccgtataaaatggacctataggaaaattggtccataatggaccataaatttttacccatggattgctttatccctcacaataatactttgcaccat 240  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  22450325 ggttccgtataaaatggacctgtgggaaaattggtccataatggaccataaatttttactcatagattgttttatccctcacaataatactttgcaccat 22450424  T
Q  241 ctatatactatctccccccacttgccttgttttcttttcttcaatttgatcgttccacataatcctcaatgttcattaatttacccctctcttaaacaaa 340  Q
    | |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22450425 cgatatactatctccccc-acttaccttgttttcttttcttcaatttgatcgttccacataatcctcaatgttcattaatttacctctctcttaaacaaa 22450523  T
Q  341 acaaaaaattaattgttctctgctctcaaccgagcaattattatggccataggtctcacaattttcttctgaaattcttttttaatcctttg 432  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22450524 acaaaaaattgattgttctctgctctcaaccgagcaattattatggccataggtctcacaattttcttctgaaattcttttttaatcctttg 22450615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 9982021 - 9981884
Alignment:
Q  18 cgctgaatacttttcttcaattttttagatacagagaaccaacccaatcttcaattt---------------ttcttcaatttccatgttacattcacat 102  Q
    ||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||               |||||||||||||||| |||||||||||    
T  9982021 cgctgaatatttttcttcaatttttaaggtacagagaaccaacccaatcttcaatttccttgcgttcaaattttcttcaatttccatgctacattcacat 9981922  T
Q  103 attcacattcatattctttcctctaccctctctttcta 140  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  9981921 attcacattcatattctttcctctaccttctctttcta 9981884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 5569272 - 5569135
Alignment:
Q  18 cgctgaatacttttcttcaattttttagatacagagaaccaacccaatcttcaattt---------------ttcttcaatttccatgttacattcacat 102  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||               ||||||||||||| |  |||||||||||    
T  5569272 cgctgaatacttttcttcaattttttaggtacagagaaccaacccaatcttcaatttccttgcgttcaatttttcttcaatttccctactacattcacat 5569173  T
Q  103 attcacattcatattctttcctctaccctctctttcta 140  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  5569172 attcacattcatattctttcctctaccttctctttcta 5569135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 3614516 - 3614654
Alignment:
Q  18 cgctgaatacttttcttcaattttttagatacagagaaccaacccaatcttcaattt---------------ttcttcaatttccat-gttacattcaca 101  Q
    |||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||               ||||||||||||| | | ||||||||||    
T  3614516 cgctaaatacttttcttcaattttttaggtgcagagaaccaacccaatcttcaatttccttgcgttcaatttttcttcaatttcccttgctacattcaca 3614615  T
Q  102 tattcacattcatattctttcctctaccctctctttcta 140  Q
    ||||||||||||||||||||||| |||| ||| ||||||    
T  3614616 tattcacattcatattctttcctttaccttctatttcta 3614654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 35612004 - 35611893
Alignment:
Q  18 cgctgaatacttttcttcaattttttagatacagagaaccaacccaatcttcaatttttcttcaatttccatgttacattcacatattcacattcatatt 117  Q
    ||||||||||||||||| |||||||||| ||| ||||||||||||||| ||||||||           || || ||||||||||||||||||||||||||    
T  35612004 cgctgaatacttttctttaattttttaggtactgagaaccaacccaatgttcaattt-----------ccctgctacattcacatattcacattcatatt 35611916  T
Q  118 ctttcctctaccctctctttcta 140  Q
    |||||||||  | ||||||||||    
T  35611915 ctttcctctgacttctctttcta 35611893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1903 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 1107 - 970
Alignment:
Q  18 cgctgaatacttttcttcaattttttagatacagagaaccaacccaatcttcaattt---------------ttcttcaatttccatgttacattcacat 102  Q
    |||||||||||||||||||||||||||  |||| |||||||||||||||||||||||               ||||||||||||| ||| ||||||||||    
T  1107 cgctgaatacttttcttcaattttttaagtacaaagaaccaacccaatcttcaatttccttgcatttaatttttcttcaatttccctgtaacattcacat 1008  T
Q  103 attcacattcatattctttcctctaccctctctttcta 140  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  1007 attcacattcatattctttcctctaccttctctttcta 970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 303 - 432
Target Start/End: Original strand, 6198501 - 6198628
Alignment:
Q  303 tcctcaatgttcattaatttacccctctcttaaacaaaacaaaaaattaattgttctctgctctcaaccgagcaattattatggccataggtctcacaat 402  Q
    ||||||||||| ||||| ||| | ||||| ||| |||||  ||||||| ||||||||||  | | || | |||||||||||||||||||||||| |||||    
T  6198501 tcctcaatgtttattaacttatctctctcctaaccaaaa--aaaaattgattgttctcttatttgaatcaagcaattattatggccataggtctaacaat 6198598  T
Q  403 tttcttctgaaattcttttttaatcctttg 432  Q
    |||||||| |||||||||| ||||||||||    
T  6198599 tttcttctcaaattcttttgtaatcctttg 6198628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 6198440 - 6198482
Alignment:
Q  216 ccctcacaataatactttgcaccatctatatactatctccccc 258  Q
    ||||||||||||||||||||||||| |||| ||| ||||||||    
T  6198440 ccctcacaataatactttgcaccatatatacactctctccccc 6198482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 51700122 - 51700224
Alignment:
Q  141 ggttccgtataaaatggacctataggaaaattggtccataatggaccataaatttttacccatggattgctttatccctcacaataatactttgcaccat 240  Q
    |||||||||||||||| |||  ||| |||||||||||||| |||||||  | ||||||||  ||||||| |  | |||||||||||||| ||| ||||||    
T  51700122 ggttccgtataaaatgaaccattagaaaaattggtccatagtggaccactactttttacctttggattgatcaaaccctcacaataataatttacaccat 51700221  T
Q  241 cta 243  Q
    |||    
T  51700222 cta 51700224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 121
Target Start/End: Original strand, 33129742 - 33129785
Alignment:
Q  78 ttcaatttccatgttacattcacatattcacattcatattcttt 121  Q
    |||||||||| || |||||||||| |||||||||||||||||||    
T  33129742 ttcaatttccctgctacattcacacattcacattcatattcttt 33129785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 141 - 263
Target Start/End: Complemental strand, 38973976 - 38973854
Alignment:
Q  141 ggttccgtataaaatggacctataggaaaattggtccataatggaccataaatttttacccatggattgctttatccctcacaataatactttgcaccat 240  Q
    |||||||||||||||| |||  ||| |||||||||||||| |||||||  | ||||||||  ||||||| |  | | |||||||||||| ||| ||||||    
T  38973976 ggttccgtataaaatgaaccattagaaaaattggtccatagtggaccactactttttacctttggattgatcaaactctcacaataataatttacaccat 38973877  T
Q  241 ctatatactatctccccccactt 263  Q
    ||| | | |||||||| ||||||    
T  38973876 ctacacattatctccctccactt 38973854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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