View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15016_low_9 (Length: 294)

Name: NF15016_low_9
Description: NF15016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15016_low_9
NF15016_low_9
[»] chr1 (3 HSPs)
chr1 (15-279)||(7963199-7963469)
chr1 (112-206)||(8005679-8005777)
chr1 (224-262)||(8005796-8005834)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 7963199 - 7963469
Alignment:
Q  15 gagtaaacaagttaaacattaccctatggaggtcaaagtgactaggtgtattctgcaataattgaaagataaataagataattataagagagaggagagg 114  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7963199 gagtaaacaagttaaacattatcctatggaggtcaaagtgactaggtgtattctgcaataattgaaagataaataaaataattataagagagaggagagg 7963298  T
Q  115 atgag------gttgggacgtgattagttttgcttgtccttgaccagacaacacatttcctataaggcataatgaagaagaaggtagctttctattccnn 208  Q
    |||||      |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  7963299 atgaggttgaggttgggacgtgattagttttgcttgtccttgatcagacaacacatttcctataaggcataatgaagaagaaggtagctttctattcctt 7963398  T
Q  209 nnnnnnnnnnnnnnngaatgtatgtatctaagcttttagcatagttgaatagaattacacaagatgataat 279  Q
                   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7963399 tttttgtttctttttgaatgtatgtatctaagcttttagcatagttgaatagaattacacaagatgataat 7963469  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 8005679 - 8005777
Alignment:
Q  112 aggatgaggttgggacgtgattagttttgcttgtccttg----accagacaacacatttcctataaggcataatgaagaagaaggtagctttctattcc 206  Q
    |||||||||||||||||||||||||||||||||||||||    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8005679 aggatgaggttgggacgtgattagttttgcttgtccttgcttgaccaaacaacacatttcctataaggcataatgaagaagaaggtagctttctattcc 8005777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 8005796 - 8005834
Alignment:
Q  224 gaatgtatgtatctaagcttttagcatagttgaatagaa 262  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8005796 gaatgtatgtatctaagcttttagcatagttgaatagaa 8005834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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