View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15017_high_7 (Length: 219)
Name: NF15017_high_7
Description: NF15017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15017_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 23890431 - 23890633
Alignment:
| Q |
1 |
taccagtttccaactgattattctaccaagaggttccagaaaaccgataaacggaggaagttgtcaagaccgaagtcagtggcttcggttcttcatcggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23890431 |
taccagtttccaactgattattctaccaagaggttccagaaaaccgataaccggaggaagttgtcaagatcgaagtcagtggcttcggttcttcatcggt |
23890530 |
T |
|
| Q |
101 |
taacgatggaagatcgacaaggccgaacgccgccgtgacttccgacgtcgtcagttgttttggttggaaggataacggcgggttcggcggttggtggtgg |
200 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23890531 |
taacgatggaagatcgacgacgccgaacgccgccgtgacttccgacgtcgtcagttgttttggttggaaggataacggcgggttcggcggttggtggtgg |
23890630 |
T |
|
| Q |
201 |
ttt |
203 |
Q |
| |
|
||| |
|
|
| T |
23890631 |
ttt |
23890633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 27986309 - 27986474
Alignment:
| Q |
1 |
taccagtttccaactgattattctaccaagaggttccagaaaaccgataaacggaggaagttgtcaagaccgaagtcagtggcttcggttcttcatcggt |
100 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||| ||| | |||||||||| || |||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
27986309 |
taccagtttccaactgattactccaccaagaggttccagaaaactgatcaccggaggaagtagttaagatcgaactcagtggcttctgttcttcatcggt |
27986408 |
T |
|
| Q |
101 |
taacgatggaaga---tcgacaaggccgaacgccgccgtgacttccgacgtcgtcagttgttttgg |
163 |
Q |
| |
|
||||||||||||| |||| || ||||||||||||||| ||||||||||| | |||| ||||||| |
|
|
| T |
27986409 |
taacgatggaagatcgtcgataacgccgaacgccgccgtaacttccgacgtagacagtggttttgg |
27986474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 28043611 - 28043776
Alignment:
| Q |
1 |
taccagtttccaactgattattctaccaagaggttccagaaaaccgataaacggaggaagttgtcaagaccgaagtcagtggcttcggttcttcatcggt |
100 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||| ||| | |||||||||| || |||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
28043611 |
taccagtttccaactgattactccaccaagaggttccagaaaactgatcaccggaggaagtagttaagatcgaactcagtggcttctgttcttcatcggt |
28043710 |
T |
|
| Q |
101 |
taacgatggaaga---tcgacaaggccgaacgccgccgtgacttccgacgtcgtcagttgttttgg |
163 |
Q |
| |
|
||||||||||||| |||| || ||||||||||||||| ||||||||||| | |||| ||||||| |
|
|
| T |
28043711 |
taacgatggaagatcgtcgataacgccgaacgccgccgtaacttccgacgtagacagtggttttgg |
28043776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University