View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15017_low_1 (Length: 811)
Name: NF15017_low_1
Description: NF15017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15017_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Complemental strand, 42142293 - 42141833
Alignment:
| Q |
18 |
gttatgagtcaacagcatcacaccaaaactttcctatataatggaggtagaaacttggttggttagccacatacttttcatggcaagttcttaatccatg |
117 |
Q |
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| T |
42142293 |
gttatgagtcaacagcatcacaccaaaactttcctatataatggaggtagaaacttggttggttggccacatacttttcatggcaagttcttaatccatg |
42142194 |
T |
|
| Q |
118 |
aaagattgaaaggcatgaatgttattctcacatatccttttaattcaaccattgtgatttgttataagaacatgtcaagaacatgaataaaattggcttg |
217 |
Q |
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| T |
42142193 |
aaagattgaaaggcatgaatgttattctcacatatccttttaattcaaccattgtgatttgttataagaacatgtcaagaacatgaataaaattggcttg |
42142094 |
T |
|
| Q |
218 |
gcattgtaagtaactgaacatttatgaaattaaaatgatagatatgacttgtctcattgaaagattgaactattctttcactatgaaaattaataagtta |
317 |
Q |
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| T |
42142093 |
gcattgtaagtaactgaacatttatgaaattaaaatgatagatatgacttgtctcattcaaagattgaactattctttcactatgaaaattaataagtta |
42141994 |
T |
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| Q |
318 |
acaataattttgtccactctaaacttatcttctgtttaaattagcaaagggttaaagctagtgacacacaatgcacttggaagcttcttcatgctccata |
417 |
Q |
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| T |
42141993 |
acaataattttgtccactctaaacttatcttctgtttaaattagcaaagggttaaagctagtgacagacaatgcacttggaagcttcttcatgctctata |
42141894 |
T |
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| Q |
418 |
tgccgaatattatgccttaattagatcattgctgcaaaacgttgtaatctcaagtaaggaattca |
482 |
Q |
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| T |
42141893 |
ggccgaatattatg----acttagatcattgctgcaaaacatggtaatctcaagtaaggagttca |
42141833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 620 - 797
Target Start/End: Complemental strand, 42141631 - 42141451
Alignment:
| Q |
620 |
tgttgaaagttacactatcaattatcaaactttgcagacaaaaacaacatcatcatcaattctttacgttcaaaatattccaattcatctaatctatccc |
719 |
Q |
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||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| |
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| T |
42141631 |
tgttgaaagttacaccgtcagttatcaaactttgtagacaaaaacaacatcatcatcaattctttgcgttcaaaatattccaattcatccaatccatccc |
42141532 |
T |
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| Q |
720 |
atcaaaatatatttgagaataaaatgaaac----aaaaaatcaaatagtcaatcccattttctttttctccgtagcctatgt |
797 |
Q |
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| T |
42141531 |
atcaaaatagatttgagaataaaatgaaaagaaaaaaaaaacaaatagtcaa-cccattttctttttctccgtagcctatgt |
42141451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 478 - 626
Target Start/End: Complemental strand, 42141804 - 42141655
Alignment:
| Q |
478 |
attcatgtcatttaactaaaaatagtttttctcttctacaattattttattcctattttgtctagacatacataacacaaaaacttcaag-acatgtgac |
576 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || | ||| || |
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| T |
42141804 |
attcatgtcatttaattaaaaatagtttttctcttctccaattattttattcctattttgtctagacatacataacacaaaaactttgagaaaatgacac |
42141705 |
T |
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| Q |
577 |
caa-caaccttattcatatatgtaatcattaacaactattaatatgttgaa |
626 |
Q |
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||| | ||||||||||||| || ||||| |||||||||||||||||||||| |
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| T |
42141704 |
caacctaccttattcatatgtgcaatca-taacaactattaatatgttgaa |
42141655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 6e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 624 - 685
Target Start/End: Original strand, 25520163 - 25520224
Alignment:
| Q |
624 |
gaaagttacactatcaattatcaaactttgcagacaaaaacaacatcatcatcaattcttta |
685 |
Q |
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| T |
25520163 |
gaaaggtacactatcaattatcaaactttgcagacaaaaacaacatcatcatcaattcttta |
25520224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 670
Target Start/End: Complemental strand, 7052646 - 7052597
Alignment:
| Q |
621 |
gttgaaagttacactatcaattatcaaactttgcagacaaaaacaacatc |
670 |
Q |
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|||||||||||| | || | ||||||||||||| |||||||||||||||| |
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| T |
7052646 |
gttgaaagttaccccataatttatcaaactttgaagacaaaaacaacatc |
7052597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 491 - 541
Target Start/End: Original strand, 8550540 - 8550587
Alignment:
| Q |
491 |
aactaaaaatagtttttctcttctacaattattttattcctattttgtcta |
541 |
Q |
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| T |
8550540 |
aactaaaaatagtttttctctt---caattattttaatcctattttgtcta |
8550587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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