View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15017_low_2 (Length: 586)
Name: NF15017_low_2
Description: NF15017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15017_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 87 - 575
Target Start/End: Complemental strand, 44944482 - 44943998
Alignment:
| Q |
87 |
ttagttgtgttaattgatttccttagaacatagctattgtttgttctaccaacatatatatttggcctttttaggatctaattttgtgcaacattgtctg |
186 |
Q |
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| T |
44944482 |
ttagttgtgttaattgatttccttagaacatagttattgtttgttctaccaacatat----ttggcctttttaggatctaattttgtgcaacattgtctg |
44944387 |
T |
|
| Q |
187 |
tcttttttcttcttcttccattaattcaattgctatattttcaggatcccttcaagaacggtgttttggcggtccaaactatccgcaacaatatcatggc |
286 |
Q |
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| T |
44944386 |
tcttttttcttcttcttccattaattcaattgctatattttcaggatcccttcaagaacggtgttttgggggtccaaactatccgcaacaatatcatggc |
44944287 |
T |
|
| Q |
287 |
gtctaatcttcttgctacaacagcaatcacattaagttcacttattggaatttttgctagcagttcatggagttctgatgatacatcttccatacttcaa |
386 |
Q |
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| T |
44944286 |
gtctaatcttcttgctacaacagcaatcacattaagttcacttattggaatttttgctagcagttcatggagttctgatgatacatcttccatacttcaa |
44944187 |
T |
|
| Q |
387 |
agtacttcttcaatcaaacgtatttcaattaccatttgcttccttgttgcatttttatgcaatgttcagtctataaggtgctattgtcatgtcagttttt |
486 |
Q |
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| T |
44944186 |
agtacttcttcaatcaaacgtatttcgattaccatttgcttccttgttgcatttttatgcaatgttcagtctataaggtgctattgtcatgtcagttttt |
44944087 |
T |
|
| Q |
487 |
taatcaccgcacctacactcagagataaaaaggcatatatggaatatattgctaagacattgaatcgtgctagtcactcttggtccctt |
575 |
Q |
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| T |
44944086 |
taatcaccgcacctacactccgagataaaaaggcatatatggaatatattgctaagacattgaatcgtgctagtcactcttggtccctt |
44943998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 144 - 575
Target Start/End: Complemental strand, 44946089 - 44945652
Alignment:
| Q |
144 |
atatttggcctttttaggatctaattttgtgcaacattgtctgtcttt--tttcttc-ttcttccattaattcaattgctatattttcaggatcccttca |
240 |
Q |
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|||||||| ||||||| | ||||||||||||||||||||||||| ||| ||| ||| || |||||||||||||||||||||||||||||||||||| || |
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| T |
44946089 |
atatttggtctttttatgctctaattttgtgcaacattgtctgtatttattttattcctttttccattaattcaattgctatattttcaggatccctcca |
44945990 |
T |
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| Q |
241 |
agaacggtgttttggcggtccaaactatccgcaacaatatcatggcgtctaatcttcttgctacaacagcaatcacattaagttcacttattggaatttt |
340 |
Q |
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| T |
44945989 |
agaacggtgttttggcgatccaaacaatccgcaacaatatcatggcgtctactcttctttctacaacagctatcacactaagttcacttattggaatttt |
44945890 |
T |
|
| Q |
341 |
tgctagcagttcatggagttctgatgatacatc---ttccatacttcaaagtacttcttcaatcaaacgtatttcaattaccatttgcttccttgttgca |
437 |
Q |
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| T |
44945889 |
tgctagcagttcgtggagttctgatgatacatcatcttccatacttcaaagtacttcttcaatcaaacacatttcgattaccatctgcttccttgttgca |
44945790 |
T |
|
| Q |
438 |
tttttatgcaatgttcagtctataaggtgctattgtcatgtcagttttttaatcaccgcacctacactcagagataaaaaggcatatatggaatatattg |
537 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
44945789 |
tttttatgcaatgttcagtctataagatgctattgtcatgtcagctttttaatcaacgcgccaacactcagagataaaaaggcatatatggaatatattg |
44945690 |
T |
|
| Q |
538 |
ctaagacattgaatcgtgctagtcactcttggtccctt |
575 |
Q |
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|||||||||||||||| |||||| |||| ||||||||| |
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| T |
44945689 |
ctaagacattgaatcgcgctagttactcctggtccctt |
44945652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 252 - 348
Target Start/End: Complemental strand, 44941155 - 44941059
Alignment:
| Q |
252 |
ttggcggtccaaactatccgcaacaatatcatggcgtctaatcttcttgctacaacagcaatcacattaagttcacttattggaatttttgctagca |
348 |
Q |
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||||| || ||||| |||||||||||||| ||||| |||| ||| || |||||||||||||||||| |||||||||| |||||| ||||||| |||| |
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| T |
44941155 |
ttggctgttcaaacaatccgcaacaatataatggcatctactctactagctacaacagcaatcacactaagttcactaattggagtttttgcaagca |
44941059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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