View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15017_low_3 (Length: 569)
Name: NF15017_low_3
Description: NF15017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15017_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 551
Target Start/End: Original strand, 43410733 - 43411260
Alignment:
| Q |
13 |
gcaaaggcaaagatagggacaagtattgcaaacccacacagaggtgcaaacacagacaccatttgtgcactattgggatgccaatattatataacattgg |
112 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| ||||| |||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
43410733 |
gcaaaggcaaaaatagggacaagtattgcaaacccacaccgaggtacaaacacgaacaccgtttgtgcattattgggatgtcaatattatataacattgg |
43410832 |
T |
|
| Q |
113 |
ccagtgggacaccgagcgggtaatcatcgtttcatacatttgattgaaaattattactctctctctatgtcacataattacggagctttttgttcatttt |
212 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43410833 |
ccattgagacaccgagcgggtaatcatcgtttcatacatttgattgaaaattattactctctctctatgtcacataattaccgagctttttgttcatttt |
43410932 |
T |
|
| Q |
213 |
gtacatgttaagaaaaaatgcataagtgaaagagagaa--ttagttttatgatcacaatccaatgcatggccatggattgtccgttgattctgattgcaa |
310 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43410933 |
gtacattttaagaaaaaatgcataagtgaacgagagaaaattagttttatgatcacaatccaatgcatggccatggattgtccgttgattctgattacaa |
43411032 |
T |
|
| Q |
311 |
tccaaagagataaaataccttaaccaaacagctcaatgcatagccatggactgtctgttgatgacaaaatacaccagaaaaattttcatatgtgtactca |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43411033 |
tccaaagagataaaataccttaaccaaacagctcaatgcatagccatggactgtctgttgatgacaaaatacaccagaaaatttttcatatgtgtactca |
43411132 |
T |
|
| Q |
411 |
agtaatctgcaccatttttatcaaacatatgtatagtagtagttagcaacatgattcagtgaaatttactgaaattttagtca-atttgataaatatgta |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||| |
|
|
| T |
43411133 |
agtaatctgcaccatttttatcaaacatatgtatagtagtagttagcaacatgattcagtgacat--------------gtcatatttgataaatatgta |
43411218 |
T |
|
| Q |
510 |
tttatcgttcaatgacatgtcatatttttcataatattttct |
551 |
Q |
| |
|
|| |||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
43411219 |
ttcatcgttcaatgatatgtcatattttttataatattttct |
43411260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 34955069 - 34955117
Alignment:
| Q |
67 |
gacaccatttgtgcactattgggatgccaatattatataacattggcca |
115 |
Q |
| |
|
||||||| ||||| || |||||||| ||||| ||||||||||||||||| |
|
|
| T |
34955069 |
gacaccacttgtgtaccattgggataccaatgttatataacattggcca |
34955117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 37811087 - 37811135
Alignment:
| Q |
67 |
gacaccatttgtgcactattgggatgccaatattatataacattggcca |
115 |
Q |
| |
|
||||||| ||||| || |||||||| ||||| ||||||||||||||||| |
|
|
| T |
37811087 |
gacaccacttgtgtaccattgggataccaatgttatataacattggcca |
37811135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University