View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15017_low_4 (Length: 452)
Name: NF15017_low_4
Description: NF15017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15017_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 20 - 442
Target Start/End: Original strand, 42209957 - 42210377
Alignment:
| Q |
20 |
catgtgatatgcaatttataccataagattaaaataagacaacctacattctaactatgataatttgagttcaaaatacaaaatcaaaacatgaactata |
119 |
Q |
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| T |
42209957 |
catgtgatatgcaatttataccataagattaaaataagacaacctacattc-aactatgataatttgagttcaaaatacaaaatcaaaacatgaactata |
42210055 |
T |
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| Q |
120 |
agatctcgatatgtcaatttatatcaacgattgcgtgattgtgtgaatatttcaaaaccataagctacaaactgtagatgtgttcataacatgtcctgag |
219 |
Q |
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| T |
42210056 |
agat-----tatgccaatttatatcaacgattgcgtgattgtgtgaatatttcaaaaccataagctacaaactgtagatgtgttcataacatgtcctgag |
42210150 |
T |
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| Q |
220 |
gtaaagcatcaatgagatgatttttcaaaatttaagaaaacattaaagtaaaaatggtgggggttagaggatgaatcgtataattaggctaatgcaagaa |
319 |
Q |
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| T |
42210151 |
ggaaagcatcaatgagatgatttttcaaaatttaagaaaacattaaagtaaaaatggtgggggttagaggatgaatcgtataattaggctaatgcaagaa |
42210250 |
T |
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| Q |
320 |
ttctcatatc----atataaaaataaaaatggtgtcttttgtctcttcttttgaatgttatggggtcccttgattctgcttcttttggctgacattccta |
415 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42210251 |
ttctcatatcatatatataaaaataaaaatggtgtcttttgtctcttcttttgaatgttatggggtcccttgattctgcttcttttggctgacattcctt |
42210350 |
T |
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| Q |
416 |
ttttatagtgtcttttgatatcctttg |
442 |
Q |
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| T |
42210351 |
ttttatagtgtcttttgatatcctttg |
42210377 |
T |
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