View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15018_high_1 (Length: 397)
Name: NF15018_high_1
Description: NF15018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15018_high_1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 30 - 397
Target Start/End: Original strand, 40785051 - 40785419
Alignment:
| Q |
30 |
atggagaactatttttatcaatcaacagcctagctatccacctgctcgtatcatatcaggtaggcactcacaaataattgacctcaagtattagcttgtt |
129 |
Q |
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| T |
40785051 |
atggagaactatttttatgaatcaacagcctagctatccacctgctcatatcatatcaggtaggcactcacaaataattgacctcaagtat-agcttgtt |
40785149 |
T |
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| Q |
130 |
tccttctacaatccataattccacctgaatacaatctcttttaacaatgatttgtttgttgattgccacttacctttatactggatatataagctttgat |
229 |
Q |
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| T |
40785150 |
tccttctacaatccataattccacctgaatacaatctcttttaacaatgatttgtttgttgattgccacttacctttatactggatatataagctttgat |
40785249 |
T |
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| Q |
230 |
catgatataattagttcaattgattcaaccataattatactaacact--cccaataagtaaaacaactcttattctcaaacaacaatgatgtaaccaaca |
327 |
Q |
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| T |
40785250 |
catgatataattaattcaattgattcaaccataattatactaacactagcaaaataagtaaaacaactcttattctcaaacaacaatgatgtaaccaaca |
40785349 |
T |
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| Q |
328 |
atttccactatatgtctctctaactctctcacttccatctacccttatgtcatctatatatatgtctaga |
397 |
Q |
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| T |
40785350 |
atttccactatctgtctctctaactctctcacttccacccacctttatgtcatctatatatatgtctaga |
40785419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 349
Target Start/End: Original strand, 40793026 - 40793090
Alignment:
| Q |
284 |
agtaaaacaactcttattctcaaacaacaatgatgtaaccaacaatttccactatatgtctctcta |
349 |
Q |
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| T |
40793026 |
agtaaaatatctattattctcaaa-aacaatgatgtaaccaacaaattccactatttgtctctcta |
40793090 |
T |
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