View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15018_high_7 (Length: 318)
Name: NF15018_high_7
Description: NF15018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15018_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 48 - 313
Target Start/End: Original strand, 38390529 - 38390794
Alignment:
| Q |
48 |
taaaaacgtgtattgccgattctatttaagaacaggaagatnnnnnnnngatcatcgtatattttttaagtgatcatttcatttcatctcatcattatta |
147 |
Q |
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| T |
38390529 |
taaaaacgtgtattgccgattctatttaagaacaggaagagaaaaaaaagatcatcgtatattttttaagtgatcatttcatttcatctcatcattatta |
38390628 |
T |
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| Q |
148 |
gaattaagagagtgtttcattcttgatacatagtatgtctgaggcaattgtggatgaaaaggttatcgaagaagtagaagaagaaaaaatgagtgtggaa |
247 |
Q |
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| T |
38390629 |
gaattaagagagtgtttcattcttgatacatagtatgtctgaggcaattgaggatgaaaaggttatcgaagaagtagaagaagaaaaaatgagtgtggaa |
38390728 |
T |
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| Q |
248 |
gaagataaatacggaggtgttattctaactgtccacaagcctataaattcttcttcctttgcttct |
313 |
Q |
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| T |
38390729 |
gaagataaatacggaggtgttattctaactgtccacaagcctatggattcttcttcctttgcttct |
38390794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 38390453 - 38390502
Alignment:
| Q |
1 |
atactttgacgaattctacttcgttcaaattcatagcattttcgagctaa |
50 |
Q |
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| T |
38390453 |
atactttgacgaattctacttcgttcaaattcatagcattttcgagctaa |
38390502 |
T |
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