View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15018_high_9 (Length: 305)

Name: NF15018_high_9
Description: NF15018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15018_high_9
NF15018_high_9
[»] chr3 (15 HSPs)
chr3 (11-215)||(7334992-7335196)
chr3 (21-121)||(2491315-2491415)
chr3 (6-121)||(2659858-2659973)
chr3 (21-126)||(2474340-2474445)
chr3 (11-182)||(9566543-9566711)
chr3 (6-126)||(2475880-2476000)
chr3 (21-121)||(9562694-9562794)
chr3 (6-120)||(13497416-13497530)
chr3 (21-94)||(2501414-2501487)
chr3 (21-121)||(7325128-7325228)
chr3 (22-120)||(2630570-2630668)
chr3 (44-121)||(2645088-2645165)
chr3 (34-122)||(755376-755464)
chr3 (21-121)||(7443725-7443825)
chr3 (16-119)||(747851-747954)
[»] scaffold0097 (1 HSPs)
scaffold0097 (21-121)||(33889-33989)
[»] chr6 (1 HSPs)
chr6 (37-91)||(24418217-24418271)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 7334992 - 7335196
Alignment:
Q  11 cagagataacagaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaag 110  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7334992 cagagataacagaattaaagaacttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaag 7335091  T
Q  111 agtaggaagctgggttgttccggtggttgtttctgccgttagtgacagagaagtaagaacgatgtcgtttgggttgtcctcatcgctaacgtgcgccatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7335092 agtaggaagctgggttgttccggtggttgtttctgccgttagtgacagagaagtaagaacgatgtcgtttgggttgtcctcatcgctaacgtgcgccatt 7335191  T
Q  211 tctct 215  Q
    |||||    
T  7335192 tctct 7335196  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 2491415 - 2491315
Alignment:
Q  21 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 120  Q
    |||||| || || ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  2491415 agaattgaaaaacttacaaaggcatcgaagctgtaccagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaaaggaagagttggaagc 2491316  T
Q  121 t 121  Q
    |    
T  2491315 t 2491315  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 6 - 121
Target Start/End: Original strand, 2659858 - 2659973
Alignment:
Q  6 aggagcagagataacagaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaac 105  Q
    |||| |||| |||| |||||| || || ||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  2659858 aggatcagaaataagagaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggagatcaaaa 2659957  T
Q  106 ggaagagtaggaagct 121  Q
    |||||||  |||||||    
T  2659958 ggaagagctggaagct 2659973  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 2474445 - 2474340
Alignment:
Q  21 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 120  Q
    |||||||||||| |||||||| || |||||||||||  ||||||| || ||||||||||| |||||||||||||||| |||||| |||||||| |||||     
T  2474445 agaattaaagaacttacagaggcaccgaagctgtacaggtaatttgacgggaagcctacagagaatctcaggcaggagatcaaagggaagagtgggaagt 2474346  T
Q  121 tgggtt 126  Q
    ||||||    
T  2474345 tgggtt 2474340  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 9566543 - 9566711
Alignment:
Q  11 cagagataacagaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaag 110  Q
    |||| |||| |||||| ||| | || ||||| || ||||||||| ||||||||||||  ||||||||||| ||||||||||||| |||||| || |||||    
T  9566543 cagaaataagagaattgaaggacttgcagaggcaccgaagctgtccgagtaatttcatgggaagcctacaaagaatctcaggcaagacatcgaagggaag 9566642  T
Q  111 agtaggaagctgggttgttccggtggttgtttctgccgttagtgacagagaagtaagaacgatgtcgtttgg 182  Q
    |||||||||||||    |||||||||||||||| |||||   |||| || ||||||| |  |||||||||||    
T  9566643 agtaggaagctgg---attccggtggttgtttccgccgtgcatgactgacaagtaaggaatatgtcgtttgg 9566711  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 6 - 126
Target Start/End: Complemental strand, 2476000 - 2475880
Alignment:
Q  6 aggagcagagataacagaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaac 105  Q
    |||| |||| |||| |||||| || || ||||| || || |||||||||||||||||||| || || | |||| |||||||||||||||||||||||||     
T  2476000 aggatcagaaataagagaattgaaaaacttacaaaggcaccgaagctgtacgagtaatttgacaggtaacctaaacagaatctcaggcaggacatcaaag 2475901  T
Q  106 ggaagagtaggaagctgggtt 126  Q
    |||||||| ||||||||||||    
T  2475900 ggaagagtgggaagctgggtt 2475880  T

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Target: chr3; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 9562694 - 9562794
Alignment:
Q  21 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 120  Q
    |||||| ||||| | ||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| | |||||| |||||||| ||||||    
T  9562694 agaattgaagaactcacacagacatcgaagctgtacaagtaatttcaccggaagcctacagagaatttcaggcagaagatcaaaaggaagagttggaagc 9562793  T
Q  121 t 121  Q
    |    
T  9562794 t 9562794  T

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Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 13497530 - 13497416
Alignment:
Q  6 aggagcagagataacagaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaac 105  Q
    |||| ||||||| | ||||||||| || || ||||| |||||||| ||||| ||||| ||||||||||||||||| || ||||||||||||| ||||||     
T  13497530 aggatcagagatcaaagaattaaaaaacttgcagaggcatcgaagttgtacaagtaacttcaccggaagcctacaaaggatctcaggcaggagatcaaat 13497431  T
Q  106 ggaagagtaggaagc 120  Q
    ||||| |||||||||    
T  13497430 ggaagtgtaggaagc 13497416  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 2501487 - 2501414
Alignment:
Q  21 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggca 94  Q
    |||||| ||||| ||||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  2501487 agaattgaagaacttacaaaggcatcgaagctgtactagtaatttcaccggaagcctgcacagaatctcaggca 2501414  T

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Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 7325128 - 7325228
Alignment:
Q  21 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 120  Q
    |||||| ||||| |||||||| || |||||||||| |||||||||||| |||||||| || ||||||||||| | |||||| || |||||||| ||||||    
T  7325128 agaattgaagaacttacagaggcaccgaagctgtatgagtaatttcacaggaagcctgcagagaatctcaggtaagacatcgaaaggaagagttggaagc 7325227  T
Q  121 t 121  Q
    |    
T  7325228 t 7325228  T

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Target: chr3; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 2630668 - 2630570
Alignment:
Q  22 gaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 120  Q
    ||||| ||||| ||||| || || |||||||| ||||||||||||||||||||| |||| ||||| |||| ||| ||||||||||||||| | ||||||    
T  2630668 gaattgaagaacttacaaaggcaccgaagctgcacgagtaatttcaccggaagcatacagagaatgtcagtcagaacatcaaacggaagaatcggaagc 2630570  T

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Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 2645088 - 2645165
Alignment:
Q  44 atcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagct 121  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||| |||| |||||  |||||||| |||||||    
T  2645088 atcgaagctgtataagtaatttcaccggaagcctacaaagaatctcaggaaggagatcaacaggaagagttggaagct 2645165  T

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Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 755376 - 755464
Alignment:
Q  34 ttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagctg 122  Q
    |||||||| || || |||||| |||||||||| |  ||||||||||| |||||||||||||||||||| |  |||||||||||||||||    
T  755376 ttacagaggcaccgcagctgtccgagtaatttgatgggaagcctacaaagaatctcaggcaggacatcgattggaagagtaggaagctg 755464  T

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Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 7443725 - 7443825
Alignment:
Q  21 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 120  Q
    |||||| ||||| |||||||| || ||||| |||| |||||||||||| |||||||| || ||||||||||| |||| ||| || |||||||| ||||||    
T  7443725 agaattgaagaacttacagaggcaccgaagttgtatgagtaatttcacaggaagcctgcagagaatctcagggaggagatcgaagggaagagtgggaagc 7443824  T
Q  121 t 121  Q
    |    
T  7443825 t 7443825  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 747851 - 747954
Alignment:
Q  16 ataacagaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtag 115  Q
    |||| ||||| ||| || |||||||| |||||||| |||||||||||||| |  ||||||||||  |||| |||||| |  ||||| || |||||||| |    
T  747851 ataagagaataaaaaaacttacagaggcatcgaagttgtacgagtaatttgatgggaagcctaccgagaaactcagggaaaacatcgaatggaagagtgg 747950  T
Q  116 gaag 119  Q
    ||||    
T  747951 gaag 747954  T

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Target: scaffold0097 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 33989 - 33889
Alignment:
Q  21 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 120  Q
    ||||| |||||| |||||||| ||||| || |||| ||||||||| |||||||||||||| ||||||||||| | || |||||| |||||||| ||||||    
T  33989 agaatcaaagaacttacagaggcatcggagttgtatgagtaatttgaccggaagcctacatagaatctcaggtatgagatcaaaaggaagagttggaagc 33890  T
Q  121 t 121  Q
    |    
T  33889 t 33889  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 24418217 - 24418271
Alignment:
Q  37 cagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcag 91  Q
    |||||||| ||||| || | |||||| ||||| ||||||||||||||||||||||    
T  24418217 cagagacagcgaagttgaaggagtaacttcacgggaagcctacacagaatctcag 24418271  T

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