View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15018_low_1 (Length: 546)
Name: NF15018_low_1
Description: NF15018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15018_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 47266062 - 47265752
Alignment:
| Q |
1 |
aaaaatcattcacaaaattcaaagcgggtatagaaggcttacgatgcaatgtacatggatgaaacacccagcaattgaagcttgaccctacagatagggt |
100 |
Q |
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| T |
47266062 |
aaaaatcattcacaaaattcaaagcgggtatagaaggcttacgatgcaatgtacatggatgaaacacccagcaattgaagcttgaccctacagatagggt |
47265963 |
T |
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| Q |
101 |
aataagataggaacctatctatgtatgaaacagcgcgatgaagtgtatcgttttgaagcttgtattcttcaacaacttctactaaccaatcaatcaatat |
200 |
Q |
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| T |
47265962 |
aataagataggaacctatctatgtatgaaacagcgcgatgaagtgtatcgttttgaagcttgtattcttcaacaacttctactaaccaatcaatcaatat |
47265863 |
T |
|
| Q |
201 |
tcctctcatttttggatcaatgtctctctgaactatatccatgtaatccttcattggtcttctctttgtctccatctaagcacaaaaacatcgaatctca |
300 |
Q |
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| T |
47265862 |
tcctctcatttttggatcaatgtctctctgaactatatccatgtaatccttcattggtcttctctttgtctccatctaagtacaaaaacatcgaatctcg |
47265763 |
T |
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| Q |
301 |
atcaaatattt |
311 |
Q |
| |
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||||||||||| |
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| T |
47265762 |
atcaaatattt |
47265752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 320 - 528
Target Start/End: Complemental strand, 47265704 - 47265496
Alignment:
| Q |
320 |
tatatatacaattttgaaatagtgtgtaaagacccataagattacctcgatggatcgaagatagttataagcactggaaacaacaggagcatcaaacttt |
419 |
Q |
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| T |
47265704 |
tatatatacaattttgaaatagtgtgtaaagacccataagattacctcgatggatcgaagatagttataagcactggaaacaacaggagcatcaaacttt |
47265605 |
T |
|
| Q |
420 |
tcatgggtagttgattcttcaccaatgctattggtcttatcggacgcagttggcagagtttgaggaacagtgagattggttgttgaattgggaagttcac |
519 |
Q |
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| T |
47265604 |
tcatgggtagttgattcttcaccaatgctattggtcttctcggacgcagttggcagagtttgaggaacagtgagattggttgttgaattgggaagttcac |
47265505 |
T |
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| Q |
520 |
ccaacacga |
528 |
Q |
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| T |
47265504 |
ccaacacga |
47265496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 32 - 280
Target Start/End: Complemental strand, 47258662 - 47258414
Alignment:
| Q |
32 |
agaaggcttacgatgcaatgtacatggatgaaacacccagcaattgaagcttgaccctacagatagggtaataagataggaacctatctatgtatgaaac |
131 |
Q |
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| T |
47258662 |
agaaggcttacgatgcaatgtagaaggatgaaacacccaacaattcaaggttgatccttctgatagggtgagaagataggaatatatctatgtatgatac |
47258563 |
T |
|
| Q |
132 |
agcgcgatgaagtgtatcgttttgaagcttgtattcttcaacaacttctactaaccaatcaatcaatattcctctcatttttggatcaatgtctctctga |
231 |
Q |
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||| ||||||||||||| || |||||||||||||||||| ||||||||||||||||||| | |||| ||||||||| || |||| ||||| ||||||| |
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| T |
47258562 |
agcaagatgaagtgtatcattatgaagcttgtattcttcagcaacttctactaaccaatccaccaattttcctctcaattctggagtaatgtatctctga |
47258463 |
T |
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| Q |
232 |
actatatccatgtaatccttcattggtcttctctttgtctccatctaag |
280 |
Q |
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| ||| |||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
47258462 |
agtatctccatgtaatccttcattggtcttctcttttcctccaactaag |
47258414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 47249720 - 47249767
Alignment:
| Q |
36 |
ggcttacgatgcaatgtacatggatgaaacacccagcaattgaagctt |
83 |
Q |
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| T |
47249720 |
ggcttacgatgcaatgagcatggatgaaacaccgagcaactgaagctt |
47249767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 47242893 - 47242938
Alignment:
| Q |
38 |
cttacgatgcaatgtacatggatgaaacacccagcaattgaagctt |
83 |
Q |
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| T |
47242893 |
cttacgatgcaatgagcatggatgaaacaccaagcaactgaagctt |
47242938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 47254150 - 47254195
Alignment:
| Q |
38 |
cttacgatgcaatgtacatggatgaaacacccagcaattgaagctt |
83 |
Q |
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|||||||||| ||| ||||||||||||||| |||||||||||||| |
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| T |
47254150 |
cttacgatgcgatgagcatggatgaaacaccaagcaattgaagctt |
47254195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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