View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15019_high_2 (Length: 452)
Name: NF15019_high_2
Description: NF15019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15019_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 2122162 - 2122577
Alignment:
| Q |
18 |
aaatcactaccattttttgttgatacatataattagaaaacaagtatatacatatatcaagattaaccgtatagtttaatggcctttatatgaaa-tttt |
116 |
Q |
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| T |
2122162 |
aaatcactaccattttttgttgatacatataattagaaaacaagtatatacatatatcaagattaaccgtatagtttaatggcctttatatgaaaatttt |
2122261 |
T |
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| Q |
117 |
tatgttcttaaactaaactggaaatatttgagagctgggatatttttgatacactagcacggatcaccgttgtgggtcacgtaaaaaataaatgggcatg |
216 |
Q |
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| T |
2122262 |
tatgttcttaaactaaactggaaatatttgagagctgggatatttttgatacactagcacggatcaccgttgtgggtcacgtaaaaaataaatgggcatg |
2122361 |
T |
|
| Q |
217 |
gt-gtgtgtccttttcgtagaaggtgaacaaatcagtttcagaccacagaattcagctttacaaataagtacaatggaattatggaaccttggaaaaagt |
315 |
Q |
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| T |
2122362 |
gtggtgtgtccttttcttagaaggtgaacaaatcagtttcagaccacataattcagctttacaaataagtacaatggaattatggaaccttggaaaaagt |
2122461 |
T |
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| Q |
316 |
ggtcactcgtgtactgtgtggtgacgatcgatcttgtacaaaatgaaaatgcaggtacatgnnnnnnnnnggaaggaaaaatgcaggtacatttccaaac |
415 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2122462 |
ggtcactcg-----tgtgtggtgaccatcgatcttgtacaaaatgaaaatgcaggtacatgtttttttttggaaggaaaaatgcaggtacatttccaaac |
2122556 |
T |
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| Q |
416 |
ctattttcgatactgtatatt |
436 |
Q |
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| T |
2122557 |
ctattttcgatactgtatatt |
2122577 |
T |
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