View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15019_low_1 (Length: 465)
Name: NF15019_low_1
Description: NF15019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15019_low_1 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 10 - 449
Target Start/End: Complemental strand, 40634262 - 40633823
Alignment:
| Q |
10 |
gacatcatcaacccggtaactcgaaacagttaacaagttgaaggttaagaggaatataaccacaccataatcataattcttctttatataaggaatgaac |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40634262 |
gacatgatcaacccggtaactcgaaacagttaacaagttgaaggttaagaggaatataaccacaccataatcataattcttctttatataaggaatgaac |
40634163 |
T |
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| Q |
110 |
ctcatataagtggccgtagatcctgccatacacaacaagttaacaggacaccacaaataatttcgataaatgtttttgaattgattacaattgaggcctc |
209 |
Q |
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| T |
40634162 |
ctcatataagtggccgtagatcctggcatacacaacaagttaacaggacaccacaaataatttcgataaatgtttttgaattgattacaattgaggcctc |
40634063 |
T |
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| Q |
210 |
cagactagctacaagatagtgaaaagaaggttacagtttgagtgatgacaaattaaacaatagaaaatatattgacaacaaatattgtcggatactatat |
309 |
Q |
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| T |
40634062 |
cagactagctacaggatagtgaaaagaaggttacagtttgagtgatgacaaattaaacaatagaaaatatattgacaacaaatattgtcggatactatat |
40633963 |
T |
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| Q |
310 |
aaacataagatttcgagttttatgtatttgttttctttctttcaatcacatcggcggtgttagaactgtgacgttcaaataataacactatacatatata |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
40633962 |
aaacataagatttcgagttttatgtatttgttttctttctttcaatcacatcggcggtgttagaattgtgacgttcaaatcataacactatacatatata |
40633863 |
T |
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| Q |
410 |
agtaatatttgagcagtttatcaaaacaaagggaattttt |
449 |
Q |
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| T |
40633862 |
agtaatatttgagcaatttatcaaaacaaagggaattttt |
40633823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 10 - 147
Target Start/End: Complemental strand, 40645869 - 40645732
Alignment:
| Q |
10 |
gacatcatcaacccggtaactcgaaacagttaacaagttgaaggttaagaggaatataaccacaccataatcataattcttctttatataaggaatgaac |
109 |
Q |
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| T |
40645869 |
gacattatcaactcggtaacttgaaacagttaacaaattgaatgtcaagagaaagatagccacaccataatcataactcttctttatatagggaatgaac |
40645770 |
T |
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| Q |
110 |
ctcatataagtggccgtagatcctgccatacacaacaa |
147 |
Q |
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| T |
40645769 |
ctcatatatgtggttgcagatccttccatacacaacaa |
40645732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 4781714 - 4781772
Alignment:
| Q |
62 |
aatataaccacaccataatcataattcttctttatataaggaatgaacctcatataagt |
120 |
Q |
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| T |
4781714 |
aatataactagaccatagtcatagttcttctttatataaggaatgaacctcatataagt |
4781772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 5184 - 5114
Alignment:
| Q |
50 |
aaggttaagaggaatataaccacaccataatcataattcttctttatataaggaatgaacctcatataagt |
120 |
Q |
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| T |
5184 |
aaggtcaagagaaatatcataacaccatagtcataattcttctttatataaggaatgaaccttacataagt |
5114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 51861225 - 51861155
Alignment:
| Q |
50 |
aaggttaagaggaatataaccacaccataatcataattcttctttatataaggaatgaacctcatataagt |
120 |
Q |
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| T |
51861225 |
aaggtcaagagaaatatcataacaccatagtcataattcttctttatataaggaatgaaccttacataagt |
51861155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 51821306 - 51821208
Alignment:
| Q |
10 |
gacatcatcaacccggtaactcgaaacagttaacaagttgaaggttaagaggaatataaccacaccataatcataattcttctttatataaggaatgaa |
108 |
Q |
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||||| |||||| ||||||||||| ||| ||| ||| || ||||| ||||| |||| | |||||||| |||||||||||||| ||||| |||||||| |
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| T |
51821306 |
gacattatcaacacggtaactcgatacaattatcaaattaaaggtcaagagaaataccataacaccatagtcataattcttcttgatatagggaatgaa |
51821208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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