View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15019_low_11 (Length: 214)

Name: NF15019_low_11

Description: NF15019

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15019_low_11

[»] chr6 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 159; E-Value: 8e-85

Query Start/End: Original strand, 8 - 194

Target Start/End: Original strand, 29248767 - 29248953

Alignment:

Q	8	tgaggagcagcacagagaagaaaaaatcgttgtggcggtgacagaagtagagaagtactccctccccagctgtgttaagttgacatctctatacacatgc	107	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29248767	tgaggagcttcacagagaagaaaaaatcgttgtggcggtgagagaagtagagaagtactccctccccagctgtgttaagttgacatctctatacacatgc	29248866	T

Q	108	caaactactttttataagtcaaattagtacaccgaaattggcactaggaaaaatcgaactaagacctgaagaggagcacaatccaag	194	Q
		\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29248867	caaaccactttttttaagtcaaattagtacaccgaaattgacactaggaaaaatcgaaataagacctgaagaggagcacaatccaag	29248953	T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 116 - 194

Target Start/End: Complemental strand, 42430450 - 42430372

Alignment:

Q	116	tttttataagtcaaattagtacaccgaaattggcactaggaaaaatcgaactaagacctgaagaggagcacaatccaag	194	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\| \| \|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	42430450	tttttttaagtcaaactagccccccgaaattggcattggggagaatcgaactaagaccttgagaggagcacactccaag	42430372	T

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