View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15019_low_3 (Length: 389)
Name: NF15019_low_3
Description: NF15019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15019_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 373
Target Start/End: Complemental strand, 41498595 - 41498234
Alignment:
| Q |
16 |
caaaggtcggattgtatgagcaagaaggccaacaacagggtctagtgggagtgagttagttattttgtagtgtcaagaaagagtactgaatgagagtggt |
115 |
Q |
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| T |
41498595 |
caaaggtcggattgtatgagcaagaaggccaacaacagggtctagtgggagtgagttagttattttttagtgtcaagaaagagtactgaatgagagtggt |
41498496 |
T |
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| Q |
116 |
taagtagggaaggttaaatggtgtctgcaccaaagtaatccatgcaatcaacccaagataaacattcaaaggataggttactcctatgataaatttgaat |
215 |
Q |
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| T |
41498495 |
taagtagggaaggttaaatggtgtctgcaccaaagtaatccatgcaatcaacccaagatgaacattcaaaggataggttactcctatgataaatttgaat |
41498396 |
T |
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| Q |
216 |
agaaaacaccttccattaaaagaaaatgagtctaataccaagaaatatagtgaaactcttgttagattatgggttaaggtttggttagccggtgaataa- |
314 |
Q |
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| T |
41498395 |
agaaaacaccttccattaaaagaaaatgagtctaataccaagaaatatagtgaaactcttgttagattatgggttaaggtttggttagccggtgaataaa |
41498296 |
T |
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| Q |
315 |
---aatgttttaggaagttgttatttattcttttagcttaaagtgtctacttttgatttctt |
373 |
Q |
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| T |
41498295 |
atgaatgttttaggaagttgttatttattcttttagcttaaagtgtctacttttgatttctt |
41498234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 195 - 348
Target Start/End: Complemental strand, 41513682 - 41513530
Alignment:
| Q |
195 |
actcctatgataaatttgaatagaaaacaccttccattaaaagaaaatgagtctaataccaagaaatatagtgaaactcttgttagattatgggttaagg |
294 |
Q |
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| T |
41513682 |
actcctattagaaattggaagagaaaacaccttccacgaaaagaaaatgagtttaatacaaagaaatatagtgaaaatcttgttggattttgggttgagg |
41513583 |
T |
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| Q |
295 |
tttggttagccggtgaataaaatgttttaggaagttgttatttattcttttagc |
348 |
Q |
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| T |
41513582 |
ttt-attaggccatggataaaatgttttaagaagttgttattgattcttttagc |
41513530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 195 - 348
Target Start/End: Complemental strand, 41522648 - 41522496
Alignment:
| Q |
195 |
actcctatgataaatttgaatagaaaacaccttccattaaaagaaaatgagtctaataccaagaaatatagtgaaactcttgttagattatgggttaagg |
294 |
Q |
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| T |
41522648 |
actcctatcagaaattggaagagaaaacaccttccacgaaaagaaaatgagtttaatacaaagaattatagtgaaaatcttgttggattatggattgagg |
41522549 |
T |
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| Q |
295 |
tttggttagccggtgaataaaatgttttaggaagttgttatttattcttttagc |
348 |
Q |
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| T |
41522548 |
tttgg-taggccatggataaaatgttttaaaaagttgttattgattcttttagc |
41522496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 41517606 - 41517526
Alignment:
| Q |
51 |
cagggtctagtgggagtgagttagttattttgtagtgtcaagaaagagtactgaatgagagtggttaagtagggaaggtta |
131 |
Q |
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| T |
41517606 |
cagggtctagtgggagggagttagttatttagcagcgtcgagaaatagtactgaatgagagtggttatgcaggggaggtta |
41517526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 219 - 290
Target Start/End: Complemental strand, 33080386 - 33080315
Alignment:
| Q |
219 |
aaacaccttccattaaaagaaaatgagtctaataccaagaaatatagtgaaactcttgttagattatgggtt |
290 |
Q |
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| T |
33080386 |
aaacaccttcaacgaaaagaaaatgagtttaatacaaagaaatatagtgaaaatcttgttggattatgggtt |
33080315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 41508013 - 41507949
Alignment:
| Q |
51 |
cagggtctagtgggagtgagttagttattttgtagtgtcaagaaagagtactgaatgagagtggt |
115 |
Q |
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| T |
41508013 |
cagggtctaatgggtgggagttagttatttagtagcatcgagaaagagtactgaatgagagtggt |
41507949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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